RetrogeneDB ID: | retro_shar_332 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841368.1:103020..103538(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000010459 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.71 % |
Parental protein coverage: | 89.64 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | LPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVHYDRSGRSLGTADV |
LPDK..H....SG.GGG.GVETG.KLL.S.LD.GVSDADIQELFA.FGTL.KKAAVHYD.S.RSLGTADV | |
Retrocopy | LPDKSDHNMPHSGSGGGPGVETGAKLLISTLDCGVSDADIQELFAAFGTL<KKAAVHYDPSSRSLGTADV |
Parental | HFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRRPAQSVNRGGMTRNRGSGGFGGGGGTRRGSRG |
HFERKADALK..K.YNGV.LDG.P.NI.L..SQ.DT..RPA..VNRG.M..NR.SGGFG.GGGT.RG.RG | |
Retrocopy | HFERKADALKGLKHYNGVLLDGNPINI*LLISQTDTHGRPA*NVNRGEMIGNRSSGGFGSGGGTQRGGRG |
Parental | GNRGRGRGTGRNSKQQLSAEELDAQLDAYNARMD |
GNRG.GRGTGRNSKQQL..EELDAQ.DAYNA... | |
Retrocopy | GNRG*GRGTGRNSKQQLPIEELDAQVDAYNAMIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005877 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013935 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012884 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025134 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010459 | 1 retrocopy |
retro_shar_332 ,
|
Tupaia belangeri | ENSTBEG00000005834 | 7 retrocopies |