Parental gene:

Alyref, ENSMUSG00000025134

Aliases:None
Description:Aly/REF export factor [Source:MGI Symbol;Acc:MGI:1341044]
Organism:Mouse (Mus musculus)
Coordinates:11:120592120..120598365(-)


>ENSMUSG00000025134
ATGGCCGACAAAATGGACATGTCTTTGGACGACATCATTAAGCTGAACCGGAGCCAGCGAGGAGGCCGCGGCGGGGGCCG
GGGTCGCGGCAGGGCCGGCTCCCAGGGCGGCCGCGGCGGCGCAGTGCAGGCCGCCGCGCGGGTGAATCGAGGCGGCGGGC
CTATGAGGAACCGGCCCGCCATCGCCCGCGGCGCCGCAGGCGGCGGCAGGAACCGGCCGGCGCCGTACAGCAGACCGAAA
CAACTTCCCGACAAATGGCAGCACGACCTCTTCGACAGCGGCTTCGGGGGTGGAGCCGGCGTGGAGACCGGCGGGAAGCT
GCTGGTGTCCAACCTGGACTTCGGAGTGTCAGATGCTGATATTCAGGAACTCTTTGCTGAATTTGGGACATTGAAAAAAG
CTGCTGTGCACTATGATCGCTCTGGACGAAGTTTAGGGACAGCAGATGTGCACTTTGAACGGAAAGCAGATGCCCTGAAG
GCTATGAAACAGTACAATGGTGTCCCTTTGGATGGCCGCCCTATGAACATCCAGCTTGTCACATCACAGATTGATACACA
GCGAAGACCTGCACAGAGCATAAACAGAGGCGGCATGACAAGAAACCGTGGCTCTGGAGGTTTTGGTGGTGGTGGCACCA
GGAGAGGGACACGTGGAGGCAGCCGGGGAAGAGGTAGAGGCACCGGCAGGAACTCAAAGCAGCAGCTTTCTGCAGAGGAG
TTGGACGCACAGCTGGATGCTTACAATGCAAGGATGGACACCAGCTAA

Library Parental gene expression (RPM)
SRP007412_brain 20 .42 RPM
SRP007412_cerebellum 30 .39 RPM
SRP007412_heart 23 .85 RPM
SRP007412_kidney 27 .47 RPM
SRP007412_liver 14 .94 RPM
SRP007412_testis 41 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005877 ortholog_one2many 1 retrogene
retro_cfam_1395,
Gorilla gorilla ENSGGOG00000013935 ortholog_one2many 1 retrogene
retro_ggor_2523,
Macaca mulatta ENSMMUG00000012884 ortholog_one2many 1 retrogene
retro_mmul_1679,
Sarcophilus harrisii ENSSHAG00000010459 ortholog_many2many 1 retrogene
retro_shar_332,
Tupaia belangeri ENSTBEG00000005834 ortholog_many2many 7 retrogenes
retro_tbel_237, retro_tbel_2432, retro_tbel_251, retro_tbel_2690, retro_tbel_2918, retro_tbel_3933, retro_tbel_3934,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_286 84.21 81.96
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Download FASTA sequences of all ENSMUSG00000025134 retrocopies