Parental gene: | EDF1, ENSCAFG00000019544 |
| Aliases: | None |
| Description: | None |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 9:48723020..48726001(+) |
>ENSCAFG00000019544
ATGGCCGAGAGCGACTGGGACACGGTGACGGTGCTGCGCAAGAAGGGCCCCACTGCCGCCCAGGCGAAGTCCAAGCAGGC
CATCTTAGCAGCTCAGAGACGAGGAGAAGATGTGGAGACTTCCAAGAAATGGGCTGCTGGCCAGAACAAACAGCATTCAA
TCACCAAGAACACGGCCAAGCTGGACCGGGAGACTGAGGAGCTGCATCATGACCGTGTGACTCTGGAGGTGGGCAAGGTG
ATCCAGCAGGGTCGGCAGAGCAAGGGGCTGACCCAGAAGGATTTGGCAACGAAAATCAACGAAAAGCCGCAGGTCATCGC
GGACTATGAGAGCGGACGGGCCATTCCTAATAACCAGGTTCTGGGCAAAATCGAGAGAGCCATCGGCCTCAAGCTGCGGG
GGAAGGATATCGGGAAGCCGATTGAGAAGGGGCCAAGGGCGAAATGA
ATGGCCGAGAGCGACTGGGACACGGTGACGGTGCTGCGCAAGAAGGGCCCCACTGCCGCCCAGGCGAAGTCCAAGCAGGC
CATCTTAGCAGCTCAGAGACGAGGAGAAGATGTGGAGACTTCCAAGAAATGGGCTGCTGGCCAGAACAAACAGCATTCAA
TCACCAAGAACACGGCCAAGCTGGACCGGGAGACTGAGGAGCTGCATCATGACCGTGTGACTCTGGAGGTGGGCAAGGTG
ATCCAGCAGGGTCGGCAGAGCAAGGGGCTGACCCAGAAGGATTTGGCAACGAAAATCAACGAAAAGCCGCAGGTCATCGC
GGACTATGAGAGCGGACGGGCCATTCCTAATAACCAGGTTCTGGGCAAAATCGAGAGAGCCATCGGCCTCAAGCTGCGGG
GGAAGGATATCGGGAAGCCGATTGAGAAGGGGCCAAGGGCGAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 55 .57 RPM |
| SRP017611_kidney | 118 .54 RPM |
| SRP017611_liver | 35 .89 RPM |
| SRP012049_cerebellum | 130 .20 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000013266 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011166 | ortholog_one2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000009565 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000026812 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000015037 | possible_ortholog | 7 retrogenes | |
| Microcebus murinus | ENSMICG00000016498 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005051 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017329 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000011008 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000015092 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016272 | ortholog_one2one | 4 retrogenes | |
| Sorex araneus | ENSSARG00000007191 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000014060 | ortholog_one2one | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000002668 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_363 | 68.75 | 54.05 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_895 | 85.71 | 60.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1283 | 94.87 | 52.70 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1812 | 71.08 | 55.41 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000019544 retrocopies