Parental gene:

EDF1, ENSCAFG00000019544

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:9:48723020..48726001(+)


>ENSCAFG00000019544
ATGGCCGAGAGCGACTGGGACACGGTGACGGTGCTGCGCAAGAAGGGCCCCACTGCCGCCCAGGCGAAGTCCAAGCAGGC
CATCTTAGCAGCTCAGAGACGAGGAGAAGATGTGGAGACTTCCAAGAAATGGGCTGCTGGCCAGAACAAACAGCATTCAA
TCACCAAGAACACGGCCAAGCTGGACCGGGAGACTGAGGAGCTGCATCATGACCGTGTGACTCTGGAGGTGGGCAAGGTG
ATCCAGCAGGGTCGGCAGAGCAAGGGGCTGACCCAGAAGGATTTGGCAACGAAAATCAACGAAAAGCCGCAGGTCATCGC
GGACTATGAGAGCGGACGGGCCATTCCTAATAACCAGGTTCTGGGCAAAATCGAGAGAGCCATCGGCCTCAAGCTGCGGG
GGAAGGATATCGGGAAGCCGATTGAGAAGGGGCCAAGGGCGAAATGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 130 .20 RPM
SRP017611_brain 55 .57 RPM
SRP017611_kidney 118 .54 RPM
SRP017611_liver 35 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013266 ortholog_one2one 2 retrogenes
retro_amel_1569, retro_amel_996,
Callithrix jacchus ENSCJAG00000011166 ortholog_one2many 1 retrogene
retro_cjac_374,
Erinaceus europaeus ENSEEUG00000009565 ortholog_one2one 1 retrogene
retro_eeur_635,
Loxodonta africana ENSLAFG00000026812 ortholog_one2one 1 retrogene
retro_lafr_751,
Macropus eugenii ENSMEUG00000015037 possible_ortholog 7 retrogenes
retro_meug_108, retro_meug_1742, retro_meug_1805, retro_meug_2070, retro_meug_38, retro_meug_598, retro_meug_773,
Microcebus murinus ENSMICG00000016498 ortholog_one2one 1 retrogene
retro_mmur_312,
Macaca mulatta ENSMMUG00000005051 ortholog_one2many 1 retrogene
retro_mmul_89,
Monodelphis domestica ENSMODG00000017329 ortholog_one2one 1 retrogene
retro_mdom_1713,
Mustela putorius furo ENSMPUG00000011008 ortholog_one2one 1 retrogene
retro_mputfur_1377,
Mus musculus ENSMUSG00000015092 ortholog_one2one 3 retrogenes
retro_mmus_3324, retro_mmus_688, retro_mmus_809,
Rattus norvegicus ENSRNOG00000016272 ortholog_one2one 4 retrogenes
retro_rnor_1407, retro_rnor_2005, retro_rnor_2007, retro_rnor_2616,
Sorex araneus ENSSARG00000007191 possible_ortholog 1 retrogene
retro_sara_39,
Tupaia belangeri ENSTBEG00000014060 ortholog_one2one 4 retrogenes
retro_tbel_1404, retro_tbel_1950, retro_tbel_3538, retro_tbel_967,
Tursiops truncatus ENSTTRG00000002668 ortholog_one2one 2 retrogenes
retro_ttru_165, retro_ttru_894,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_363 68.75 54.05
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2. retro_cfam_895 85.71 60.81
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3. retro_cfam_1283 94.87 52.70
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4. retro_cfam_1812 71.08 55.41
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Download FASTA sequences of all ENSCAFG00000019544 retrocopies