RetrogeneDB ID: | retro_mputfur_1377 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897102.1:1601163..1601527(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EDF1 | ||
Ensembl ID: | ENSMPUG00000011008 | ||
Aliases: | None | ||
Description: | endothelial differentiation-related factor 1 [Source:HGNC Symbol;Acc:3164] |
Percent Identity: | 57.14 % |
Parental protein coverage: | 93.28 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | RSSREAILAAQRRGEDVETSKKWAAGQNRQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLT |
..S....LAA...G.D.E.S.K.AA..N.Q..I.K..A.L..ETEELHH...T.EVGKVIQ....SKGLT | |
Retrocopy | KKSPNPSLAAWG*GDDEEASRKQAAE*NKQPLISKTAARLEQETEELHHHWGTPEVGKVIQ----SKGLT |
Parental | QKDLATKINEKPQVIADYESGRA-IPNNQVLGKIERAIGLKLRGKDIGKPIEKGPR |
.KDLAT.IN.KPQV.AD.ESG.A..P..QVLG.I.R..GL...GKDI.K..EKG.R | |
Retrocopy | *KDLATEINKKPQVTADNESGQA>LPKKQVLGGIKRDTGLSFWGKDIRKLTEKGRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013266 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000019544 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000011166 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009565 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000026812 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015037 | 7 retrocopies | |
Microcebus murinus | ENSMICG00000016498 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005051 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017329 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011008 | 1 retrocopy |
retro_mputfur_1377 ,
|
Mus musculus | ENSMUSG00000015092 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000016272 | 4 retrocopies | |
Sorex araneus | ENSSARG00000007191 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014060 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000002668 | 2 retrocopies |