RetrogeneDB ID: | retro_amel_1569 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193635.1:571843..572150(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000009114 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EDF1 | ||
Ensembl ID: | ENSAMEG00000013266 | ||
Aliases: | None | ||
Description: | endothelial differentiation-related factor 1 [Source:HGNC Symbol;Acc:3164] |
Percent Identity: | 61.17 % |
Parental protein coverage: | 82.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEV-GKVIQQGRQSKGLTQKDL |
AILAA...GEDVETSKKWAAGQNKQH...K.TAKLD..T.ELHH.RVTLEV.G.....G....G.....L | |
Retrocopy | AILAALGQGEDVETSKKWAAGQNKQHLTGKTTAKLDQKTKELHHHRVTLEVGGQGDPAGSAEQGADSEGL |
Parental | ATK-INEKPQVIADYESGRAIPNNQVLGKIERA |
....IN.K...I.DY.SG.AI..NQVLGKI.RA | |
Retrocopy | SNE>INKKLWLIVDYKSGQAILKNQVLGKIKRA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013266 | 2 retrocopies |
retro_amel_1569 , retro_amel_996,
|
Canis familiaris | ENSCAFG00000019544 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000011166 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009565 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000026812 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015037 | 7 retrocopies | |
Microcebus murinus | ENSMICG00000016498 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005051 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017329 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011008 | 1 retrocopy | |
Mus musculus | ENSMUSG00000015092 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000016272 | 4 retrocopies | |
Sorex araneus | ENSSARG00000007191 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014060 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000002668 | 2 retrocopies |