RetrogeneDB ID:

retro_meug_38

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold86255:2422..2737(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMEUG00000013820
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMEUG00000015037
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_meug_38
GCAGAGGGGAGGGAAACACAGCACTCCATCACAAAGAACATAGCCAAGCTGGACCAAGAGACCGAGGAACCTCACCATGA
CAGGGTTGCTCTAAAAGTGGGCAAAGTGATCCAACAGCGCCAACAGAACAGGGGACTAACTCAGAAGGATATGGCCACAA
AAATCAATGAAAAGCCCCAAGTTATTACTGACTATGAGTGTGGATGGGCCATTCCTAATAACCAGGTCTTAGGTAAGATC
AAAAGAACCACTGGTCTCAAGCTTCATGGGATGGACATTGGAAAGCTGCTTGAGATGGAACTAAAGGCGAAATGA

ORF - retro_meug_38 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.04 %
Parental protein coverage: 85.25 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYECGRA
A.G...QHSITKN.AKLD.ETEE.HHDRV.L.VGKVIQQ..Q..G.TQKD.ATKINEKPQVI.DYECG.A
RetrocopyAEGRETQHSITKNIAKLDQETEEPHHDRVALKVGKVIQQRQQNRGLTQKDMATKINEKPQVITDYECGWA
ParentalIPNNQVLGKIERAIGLKLRGKDIGKPLETGPKGK
IPNNQVLGKI.R..GLKL.G.DIGK.LE...K.K
RetrocopyIPNNQVLGKIKRTTGLKLHGMDIGKLLEMELKAK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_38 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_38 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 34 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000132662 retrocopies
Canis familiaris ENSCAFG000000195444 retrocopies
Callithrix jacchus ENSCJAG000000111661 retrocopy
Erinaceus europaeus ENSEEUG000000095651 retrocopy
Loxodonta africana ENSLAFG000000268121 retrocopy
Macropus eugenii ENSMEUG00000015037 7 retrocopies
Microcebus murinus ENSMICG000000164981 retrocopy
Macaca mulatta ENSMMUG000000050511 retrocopy
Monodelphis domestica ENSMODG000000173291 retrocopy
Mustela putorius furoENSMPUG000000110081 retrocopy
Mus musculus ENSMUSG000000150923 retrocopies
Rattus norvegicus ENSRNOG000000162724 retrocopies
Sorex araneus ENSSARG000000071911 retrocopy
Tupaia belangeri ENSTBEG000000140604 retrocopies
Tursiops truncatus ENSTTRG000000026682 retrocopies



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