Parental gene: | Edf1, ENSRNOG00000016272 |
| Aliases: | Edf1, CAP-19 |
| Description: | Endothelial differentiation-related factor 1 [Source:UniProtKB/Swiss-Prot;Acc:P69736] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 3:2762581..2766887(+) |
>ENSRNOG00000016272
ATGGCCGAGAGTGACTGGGACACCGTGACGGTGCTGCGCAAGAAGGGCCCCACGGCCGCACAGGCCAAGTCTAAGCAGGC
CATCTTAGCAGCTCAGCGACGAGGAGAAGATGTGGAGACATCCAAAAAATGGGCTGCTGGCCAGAACAAGCAGCATTCCA
TCACTAAAAACACAGCCAAGCTAGACCGGGAGACAGAGGAGCTGCACCACGACAGGGTGACCCTGGAGGTGGGCAAAGTG
ATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACGCAGAAGGACCTGGCCACGAAAATCAATGAAAAGCCGCAAGTCATCGC
AGACTATGAAAGTGGACGGGCCATTCCGAATAACCAGGTTTTGGGCAAAATTGAGAGAGCCATCGGCCTCAAGCTCCGGG
GGAAGGACATCGGGAAGCCTATCGAGAAGGGGCCGAAGGCGAAATGA
ATGGCCGAGAGTGACTGGGACACCGTGACGGTGCTGCGCAAGAAGGGCCCCACGGCCGCACAGGCCAAGTCTAAGCAGGC
CATCTTAGCAGCTCAGCGACGAGGAGAAGATGTGGAGACATCCAAAAAATGGGCTGCTGGCCAGAACAAGCAGCATTCCA
TCACTAAAAACACAGCCAAGCTAGACCGGGAGACAGAGGAGCTGCACCACGACAGGGTGACCCTGGAGGTGGGCAAAGTG
ATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACGCAGAAGGACCTGGCCACGAAAATCAATGAAAAGCCGCAAGTCATCGC
AGACTATGAAAGTGGACGGGCCATTCCGAATAACCAGGTTTTGGGCAAAATTGAGAGAGCCATCGGCCTCAAGCTCCGGG
GGAAGGACATCGGGAAGCCTATCGAGAAGGGGCCGAAGGCGAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 31 .13 RPM |
| SRP017611_kidney | 76 .97 RPM |
| SRP017611_brain | 57 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000013266 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000019544 | ortholog_one2one | 4 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011166 | ortholog_one2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000009565 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000026812 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000015037 | possible_ortholog | 7 retrogenes | |
| Microcebus murinus | ENSMICG00000016498 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005051 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017329 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000011008 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000015092 | ortholog_one2one | 3 retrogenes | |
| Sorex araneus | ENSSARG00000007191 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000014060 | ortholog_one2one | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000002668 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1407 | 87.85 | 71.62 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2005 | 83.02 | 70.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_2007 | 83.18 | 71.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_2616 | 84.69 | 64.19 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000016272 retrocopies