Parental gene: | RPS23, ENSCAFG00000030896 |
| Aliases: | None |
| Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 3:25208657..25212356(+) |
>ENSCAFG00000030896
ATGGGCAAGTGTCGCGGCCTCCGTACCGCCCGGAAGCTCCGCAGCCACCGGCGGGACCAGAAGTGGCATGATAAGCAGTA
CAAGAAGGCCCACCTGGGCACGGCGCTGAAGGCCAACCCCTTCGGGGGCGCTTCCCACGCGAAGGGAATCGTGCTGGAGA
AGGTGGGGGTTGAAGCCAAACAGCCAAATTCTGCCATCAGGAAGTGCGTCCGGGTCCAGCTGATCAAGAACGGCAAAAAG
ATCACAGCCTTTGTACCCAATGATGGTTGTTTGAACTTTATTGAGGAAAATGATGAGGTTCTGGTGGCTGGATTTGGTCG
TAAAGGTCATGCTGTCGGTGACATTCCTGGAGTTCGCTTTAAAGTGGTCAAAGTAGCCAATGTCTCTCTCCTGGCCTTGT
ACAAAGGCAAGAAGGAAAGACCAAGATCATAA
ATGGGCAAGTGTCGCGGCCTCCGTACCGCCCGGAAGCTCCGCAGCCACCGGCGGGACCAGAAGTGGCATGATAAGCAGTA
CAAGAAGGCCCACCTGGGCACGGCGCTGAAGGCCAACCCCTTCGGGGGCGCTTCCCACGCGAAGGGAATCGTGCTGGAGA
AGGTGGGGGTTGAAGCCAAACAGCCAAATTCTGCCATCAGGAAGTGCGTCCGGGTCCAGCTGATCAAGAACGGCAAAAAG
ATCACAGCCTTTGTACCCAATGATGGTTGTTTGAACTTTATTGAGGAAAATGATGAGGTTCTGGTGGCTGGATTTGGTCG
TAAAGGTCATGCTGTCGGTGACATTCCTGGAGTTCGCTTTAAAGTGGTCAAAGTAGCCAATGTCTCTCTCCTGGCCTTGT
ACAAAGGCAAGAAGGAAAGACCAAGATCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 66 .29 RPM |
| SRP017611_kidney | 327 .48 RPM |
| SRP017611_liver | 154 .74 RPM |
| SRP012049_cerebellum | 263 .92 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000013358 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011247 | ortholog_one2one | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000001813 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000012931 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003578 | ortholog_one2one | 4 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002083 | possible_ortholog | 4 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008347 | possible_ortholog | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000009427 | possible_ortholog | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_375 | 76.29 | 67.13 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_436 | 73.88 | 90.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1145 | 82.99 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1305 | 72.46 | 94.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_1415 | 69.05 | 57.34 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_1743 | 84.62 | 53.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_2105 | 79.17 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000030896 retrocopies