RetrogeneDB ID: | retro_btau_80 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:94701443..94701869(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000047547 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSBTAG00000013358 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S23 [Source:UniProtKB/Swiss-Prot;Acc:Q3T199] |
Percent Identity: | 99.24 % |
Parental protein coverage: | 92.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKI |
KLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKG.VLEKVGVEAKQPNSAIRKCVRVQLIKNGKKI | |
Retrocopy | KLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGVVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKI |
Parental | TAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS |
TAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS | |
Retrocopy | TAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 4 .97 RPM | 58 .40 RPM |
ERP005899_muscle | 11 .51 RPM | 623 .76 RPM |
SRP017611_brain | 0 .09 RPM | 51 .48 RPM |
SRP017611_kidney | 2 .25 RPM | 119 .02 RPM |
SRP017611_liver | 0 .30 RPM | 127 .01 RPM |
SRP030211_testis | 0 .24 RPM | 76 .02 RPM |