RetrogeneDB ID: | retro_vpac_56 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1311:404889..405339(-) | ||
Located in intron of: | ENSVPAG00000002184 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSVPAG00000009427 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 66.89 % |
Parental protein coverage: | 85.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FAQARGAGRMGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ |
FA...G..RMGK..GL.TARKL.SH...Q.WH...Y.KAHL..ALKANPFGG.SHAK...L.KV..EAKQ | |
Retrocopy | FAHTHGPSRMGKFWGLHTARKLHSH*QEQMWHGHWYQKAHLCPALKANPFGGTSHAK-VLLVKVEIEAKQ |
Parental | PNSAIRKCVRVQLIKNGK--KITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS |
P.SAIRKCVR.QLIKN......TAF..NDGCL.F.EENDEVLVAGFG.KGHAVGDIPGV.FKVVKVA.VS | |
Retrocopy | PSSAIRKCVRIQLIKNAPLPPNTAFISNDGCLGFTEENDEVLVAGFGHKGHAVGDIPGVCFKVVKVASVS |
Parental | LLALYKGKKER |
.L......K.. | |
Retrocopy | WLYTKARRKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |