RetrogeneDB ID: | retro_cfam_1145 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:23178875..23179299(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000007487 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSCAFG00000030896 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 82.99 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MGKC-RGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVE-AKQPNSAIRK |
MGKC..GLRTARKLRSH..DQKWHDKQYKKAHLGT.L..NPFGGASHAKGIVLEKVG.E.AKQPNSAI.K | |
Retrocopy | MGKC<SGLRTARKLRSHQGDQKWHDKQYKKAHLGTDLNTNPFGGASHAKGIVLEKVGAE>AKQPNSAIWK |
Parental | CVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVA-GFGRKGHAVGDIPGVRF-KVVKVANVSLLALYKG |
CVRVQLIKNGKKITAFVPNDGCLNFI.E........GFG.KGHAVGDIPGV...KVVKVANV.LLALYKG | |
Retrocopy | CVRVQLIKNGKKITAFVPNDGCLNFI-EENDEVLV<GFGCKGHAVGDIPGVHL<KVVKVANVFLLALYKG |
Parental | KKERPRS |
KKE.PRS | |
Retrocopy | KKEKPRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 263 .92 RPM |
SRP017611_brain | 0 .00 RPM | 66 .29 RPM |
SRP017611_kidney | 0 .13 RPM | 327 .48 RPM |
SRP017611_liver | 0 .00 RPM | 154 .74 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013358 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000030896 | 7 retrocopies |
retro_cfam_1145 , retro_cfam_1305, retro_cfam_1415, retro_cfam_1743, retro_cfam_2105, retro_cfam_375, retro_cfam_436,
|
Callithrix jacchus | ENSCJAG00000011247 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000001813 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000012931 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003578 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002083 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008347 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000009427 | 7 retrocopies |