Parental gene:

CDV3, ENSCJAG00000002998

Aliases:None
Description:CDV3 homolog (mouse) [Source:HGNC Symbol;Acc:26928]
Organism:Marmoset (Callithrix jacchus)
Coordinates:17:42881203..42898434(-)


>ENSCJAG00000002998
ATGGCCGAGACGGAGGAAAGGAGCCTGGACAACTTCTTTGCTAAGAGAGACAAGAAGAAGAAGAAGGAGCGGAGCAACCG
GGCAGCGAGTGCTGCGGGCGCAGCGGGCAGCGCCAGCGGGAGCAGCGGAGCCACGGGTGGAAGCGTCCGGGGGGGGGCCA
CGGGGGCAGGGCGGAGGGGCGCGGGTCGGCCACGTGACGCGGGCTCCCCACATCGGTCCGGGCTCGCCAGGTCCGGGACC
CCCGAGGAAGATGAATGGAAAGAATTGGAGCAAAAAGAGGTTGATTACAGCGGCCTCAGGGTTCAGGCAATGCAAATAAG
CAGTGAAAAGGAAGAAGATGATAATGAAAAGAGACAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGTGGTGGTGGTG
GTATGGAAAAATCTTCAGGTCCCTGGAACAAAACAGCTCCGGTACAAGCACCTCCTGCTCCAGTAATTGTTACAGAAACC
CCAGAACCGGCAATGACTAGTGGTGTATATAGGCCTCCTGGGGCCAGGTTAACCACAACAAGGAAAACACCACAAGGACC
ACCAGAAATTTACAGCGATACACAGTTCCCATCCCTGCAGTCAACTGCCAAGCATGTAGAAAGCCGGAAGGATAAAGAAA
TGGAGAAGAGCTTTGAAGTAGTAAGACACAAAAATAGAGGTAGGGATGAGGTTTCAAAAAACCAGGCCCTTAAACTTCAG
CTAGACAACCAGTATGCTGTGCTTGAAAATCAGAAAAGCAGCCACTCACAGTACAATTAA

Library Parental gene expression (RPM)
SRP051959_spleen 90 .08 RPM
SRP051959_skeletal_muscle 88 .88 RPM
SRP051959_lymph_node 86 .53 RPM
SRP051959_lung 81 .63 RPM
SRP051959_liver 95 .78 RPM
SRP051959_kidney 62 .79 RPM
SRP051959_heart 71 .55 RPM
SRP051959_colon 77 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000035556 ortholog_one2many 1 retrogene
retro_btau_253,
Choloepus hoffmanni ENSCHOG00000008963 ortholog_one2one 5 retrogenes
retro_chof_1355, retro_chof_1701, retro_chof_1763, retro_chof_2308, retro_chof_818,
Dasypus novemcinctus ENSDNOG00000010208 ortholog_one2one 5 retrogenes
retro_dnov_2359, retro_dnov_2616, retro_dnov_460, retro_dnov_496, retro_dnov_656,
Equus caballus ENSECAG00000015689 ortholog_one2one 2 retrogenes
retro_ecab_444, retro_ecab_636,
Homo sapiens ENSG00000091527 ortholog_one2one 1 retrogene
retro_hsap_2678,
Gorilla gorilla ENSGGOG00000027821 ortholog_one2one 1 retrogene
retro_ggor_1869,
Myotis lucifugus ENSMLUG00000009864 ortholog_one2one 1 retrogene
retro_mluc_1296,
Mus musculus ENSMUSG00000032803 ortholog_one2one 10 retrogenes
retro_mmus_1266, retro_mmus_2405, retro_mmus_2408, retro_mmus_2411, retro_mmus_2412, retro_mmus_2416, retro_mmus_2418, retro_mmus_2422, retro_mmus_2423, retro_mmus_2534,
Ochotona princeps ENSOPRG00000003600 ortholog_one2one 3 retrogenes
retro_opri_1017, retro_opri_739, retro_opri_740,
Pongo abelii ENSPPYG00000025898 ortholog_one2one 1 retrogene
retro_pabe_2301,
Pan troglodytes ENSPTRG00000015409 ortholog_one2one 1 retrogene
retro_ptro_1805,
Sus scrofa ENSSSCG00000011637 ortholog_one2many 1 retrogene
retro_sscr_701,
Tupaia belangeri ENSTBEG00000014910 possible_ortholog 5 retrogenes
retro_tbel_2284, retro_tbel_2443, retro_tbel_4022, retro_tbel_4157, retro_tbel_4378,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2928 55.97 62.91
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Download FASTA sequences of all ENSCJAG00000002998 retrocopies