Parental gene:

ENSCJAG00000009945

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:71626859..71627833(-)


>ENSCJAG00000009945
ATGGGAACGCTCCCGGAACGCAGAAATATCCCGCCGTGGGTGAAAGTGCCCGAAGACCTGAAAGATCCAGAAGTGTTCCA
GGTCCAGACGCGGCTGCTGGAAGCCATGTTCGCAGGCCGGGACGGATGTCGAATCCCTTACATCGAGCAGGTGAGCAAGG
CTATGCTCGAGCTGAAAGCTCTGGAGTCTCCAGACTTCACCGAGGTCGTGGTTTACGGCTCCTATATATACAAGCTTCGA
GCCAAGTGGATGCTCCAGTCTATGGCTGAGTGGCACCGCCAGCGCCAGGAGCGAGGGATGCTCAAACTTGAGGAAGCCAT
GAATGCCCTCGAACTGAGCCCTTGGATGAACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .04 RPM
SRP051959_skeletal_muscle 0 .00 RPM
SRP051959_lymph_node 0 .02 RPM
SRP051959_lung 0 .07 RPM
SRP051959_liver 0 .00 RPM
SRP051959_kidney 0 .02 RPM
SRP051959_heart 0 .16 RPM
SRP051959_colon 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002647 ortholog_one2many 2 retrogenes
retro_cfam_1216, retro_cfam_524,
Choloepus hoffmanni ENSCHOG00000012338 ortholog_one2many 1 retrogene
retro_chof_2495,
Dasypus novemcinctus ENSDNOG00000011544 ortholog_many2many 4 retrogenes
retro_dnov_115, retro_dnov_15, retro_dnov_2318, retro_dnov_53,
Dipodomys ordii ENSDORG00000000378 ortholog_one2many 2 retrogenes
retro_dord_324, retro_dord_690,
Homo sapiens ENSG00000203909 ortholog_one2many 1 retrogene
retro_hsap_2067,
Gorilla gorilla ENSGGOG00000012001 ortholog_one2many 1 retrogene
retro_ggor_1489,
Myotis lucifugus ENSMLUG00000004463 ortholog_one2many 1 retrogene
retro_mluc_1051,
Macaca mulatta ENSMMUG00000000417 ortholog_one2many 1 retrogene
retro_mmul_1409,
Mus musculus ENSMUSG00000060461 ortholog_many2many 7 retrogenes
retro_mmus_127, retro_mmus_1280, retro_mmus_1537, retro_mmus_1666, retro_mmus_2557, retro_mmus_3415, retro_mmus_58,
Pongo abelii ENSPPYG00000016771 ortholog_one2many 1 retrogene
retro_pabe_1680,
Pan troglodytes ENSPTRG00000029547 ortholog_one2many 1 retrogene
retro_ptro_1380,
Rattus norvegicus ENSRNOG00000000199 ortholog_many2many 3 retrogenes
retro_rnor_106, retro_rnor_28, retro_rnor_76,
Sus scrofa ENSSSCG00000004283 ortholog_one2many 2 retrogenes
retro_sscr_190, retro_sscr_487,
Ictidomys tridecemlineatus ENSSTOG00000005326 ortholog_one2many 2 retrogenes
retro_itri_199, retro_itri_703,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_62 95.69 99.15
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2. retro_cjac_85 90.09 94.87
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3. retro_cjac_1978 92.00 85.47
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Download FASTA sequences of all ENSCJAG00000009945 retrocopies