Parental gene:

PTPN11, ENSCJAG00000012464

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:102716348..102816433(+)


>ENSCJAG00000012464
ATGACATCGCGGAGATGGTTTCATCCAAATATCACTGGTGTGGAGGCAGAAAACCTACTATTGACAAGAGGAGTTGATGG
CAGTTTTTTGGCAAGGCCTAGTAAAAGTAACCCTGGAGACTTCACACTTTCCGTTAGAAGAAATGGAGCTGTCACCCACA
TCAAGATTCAGAACACTGGTGATTACTATGACCTGTATGGGGGGGAGAAGTTTGCCACTTTGGCTGAGTTGGTCCAGTAT
TACATGGAACATCATGGGCAATTAAAAGAGAAGAATGGAGATGTTATTGAGCTTAAATATCCTCTGAACTGTGCAGATCC
TACCTCTGAAAGGTGGTTTCATGGACACCTCTCTGGGAAAGAAGCAGAGAAATTATTAACTGAAAAAGGAAAGCATGGTA
GCTTTCTTGTACGAGAGAGCCAGAGCCACCCTGGAGATTTTGTTCTCTCTGTGCGCACTGGTGATGACAAAGGGGAGAGC
AATGATGGCAAGTCTAAAGTGACCCACGTCATGATTCGCTGTCAGGAACTGAAATACGATGTTGGTGGAGGAGAACGGTT
TGATTCTTTGACAGATCTTGTGGAACATTACAAGAAGAATCCTATGGTGGAAACATTGGGTACAGTACTACAACTCAAGC
AGCCCCTTAACACGACTCGTATAAACGCTGCTGAAATAGAAAGCAGAGTTCGAGAACTAAGCAAATTAGCTGAGACCACA
GATAAAGTCAAGCAAGGCTTTTGGGAAGAATTTGAGACACTACAACAACAGGAGTGCAAACTTCTCTATAGCCGAAAAGA
GGGTCAAAGGCAAGAGGATGAGAATCTTCTTCTTTTTAAATTCCCCCTCCCATTTTTTGATCATACCAGGGTTGTCCTAC
ATGACGGGGATCCCAATGAGCCTGTTTCAGATTACATCAATGCAAATATCATCATGCCTGAATTTGAAACCAAGTGCAAC
AATTCAAAGCCCAAAAAGAGTTACATTGCCACACAAGGCTGTCTGCAAAACACGGTGAACGACTTTTGGCGGATGGTCTT
CCAAGAAAACTCCCGAGTGATTGTTATGACAACAAAAGAAGTGGAGAGAGGAAAGAGTAAGTGTGTCAAATACTGGCCTG
ATGAGTATGCTCTCAAAGAATATGGGGTCATGCGTGTTAGGAACGTCAAAGAAAGTGCTGCTCATGACTATACGCTACGA
GAACTAAAACTTTCAAAGGTTGGACAAGCTCTACTCCAGGGGAATACGGAGAGAACGGTCTGGCAATACCACTTTCGGAC
CTGGCCGGACCACGGAGTGCCCAGCGACCCTGGGGGTGTGCTGGACTTCCTGGAGGAGGTGCACCATAAGCAGGAGAGCA
TCATGGATGCAGGGCCAGTCGTGGTGCACTGCAGTGCTGGAATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTT
ATTGACATCATCAGAGAGAAAGGTGTTGACTGCGACATTGATGTTCCCAAAACCATCCAGATGGTGCGATCTCAGAGGTC
AGGGATGGTCCAGACAGAAGCACAGTACCGATTTATCTATATGGCGGTCCAGCATTATATTGAAACACTACAGCGCAGGA
TTGAAGAAGAGCAGAAAAGCAAGAGGAAAGGGCACGAATATACAAATATTAAGTATTCTCTAGCGGACCAGACGAGTGGA
GATCAGAGCCCGCTCCCGCCTTGTACTCCAACGCCACCCTGTGCAGAAATGAGAGAAGACAATGCTAGAGTCTATGAAAA
TGTGGGCCTGATGCAACAGCAGAAAAGTTTCAGATGA

Library Parental gene expression (RPM)
SRP051959_colon 25 .91 RPM
SRP051959_heart 57 .71 RPM
SRP051959_kidney 36 .72 RPM
SRP051959_liver 37 .49 RPM
SRP051959_lung 35 .40 RPM
SRP051959_lymph_node 22 .31 RPM
SRP051959_skeletal_muscle 70 .10 RPM
SRP051959_spleen 25 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000000531 other_paralog 1 retrogene
retro_cjac_4108,
Callithrix jacchus ENSCJAG00000005102 other_paralog 1 retrogene
retro_cjac_1577,
Homo sapiens ENSG00000179295 possible_ortholog 5 retrogenes
retro_hsap_2823, retro_hsap_3061, retro_hsap_3302, retro_hsap_3670, retro_hsap_4062,
Gorilla gorilla ENSGGOG00000010689 possible_ortholog 1 retrogene
retro_ggor_1962,
Macaca mulatta ENSMMUG00000013253 possible_ortholog 4 retrogenes
retro_mmul_1501, retro_mmul_1792, retro_mmul_1877, retro_mmul_2345,
Monodelphis domestica ENSMODG00000003120 possible_ortholog 1 retrogene
retro_mdom_516,
Nomascus leucogenys ENSNLEG00000000078 possible_ortholog 5 retrogenes
retro_nleu_1200, retro_nleu_1360, retro_nleu_1654, retro_nleu_522, retro_nleu_561,
Pongo abelii ENSPPYG00000004976 possible_ortholog 4 retrogenes
retro_pabe_2205, retro_pabe_2535, retro_pabe_2825, retro_pabe_3336,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1051 81.29 56.66
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Download FASTA sequences of all ENSCJAG00000012464 retrocopies