RetrogeneDB ID: | retro_mmul_1877 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:47001686..47002619(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000000864 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTPN11 | ||
Ensembl ID: | ENSMMUG00000013253 | ||
Aliases: | PTPN11, SHP2 | ||
Description: | tyrosine-protein phosphatase non-receptor type 11 [Source:RefSeq peptide;Acc:NP_001248038] |
Percent Identity: | 89.39 % |
Parental protein coverage: | 52.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRV |
LPFDHTRVV..DGDPNEPVSDYINANIIMPEFETKCNNSKPKKSY.ATQGCLQNTV.DFW.MVFQENSRV | |
Retrocopy | LPFDHTRVVVLDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYTATQGCLQNTVSDFWWMVFQENSRV |
Parental | IVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRT |
IVMT.KEVERGKSK.VKYWPDEYALKEYGVM.VRN.KES..HDYTLRELKLSKVGQGN.ERTVWQYHFRT | |
Retrocopy | IVMTMKEVERGKSKRVKYWPDEYALKEYGVMPVRNIKESTTHDYTLRELKLSKVGQGNMERTVWQYHFRT |
Parental | WPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPK |
WPDHGV.S.PGGVLD.LE.VHHKQESIMDAGPVVVHCSAGIGRTGTFIVID.LIDIIRE.GVDC.IDVP. | |
Retrocopy | WPDHGVLSNPGGVLDLLEKVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDSLIDIIREEGVDCNIDVPQ |
Parental | TIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETLQRRIEEEQKSKRKGHEYTNIKYSLADQTSGDQSPLPP |
TIQMV.S.RSGMVQTEA.YRFIYMAVQ.YIETLQRRIE..QKSKRKG.EYTNIKYSLADQTSGDQ.PL.P | |
Retrocopy | TIQMVWSKRSGMVQTEARYRFIYMAVQRYIETLQRRIEQKQKSKRKGNEYTNIKYSLADQTSGDQNPLLP |
Parental | CTPTPPCAEMREDSARVYENVGLMQQQKSFR |
CTP.PPCAEMR.D.AR.YENVGLMQQQKSFR | |
Retrocopy | CTPMPPCAEMRKDRARIYENVGLMQQQKSFR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 106 .78 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 85 .36 RPM |
SRP007412_cerebellum | 0 .32 RPM | 55 .47 RPM |
SRP007412_heart | 0 .00 RPM | 48 .93 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .62 RPM |
SRP007412_liver | 0 .00 RPM | 10 .25 RPM |
SRP007412_testis | 0 .00 RPM | 8 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3061 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012464 | 1 retrocopy | |
Homo sapiens | ENSG00000179295 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010689 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013253 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000003120 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000078 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004976 | 4 retrocopies |