RetrogeneDB ID: | retro_pabe_3336 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:60386729..60387813(-) | ||
Located in intron of: | ENSPPYG00000018610 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTPN11 | ||
Ensembl ID: | ENSPPYG00000004976 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase, non-receptor type 11 [Source:HGNC Symbol;Acc:9644] |
Percent Identity: | 81.22 % |
Parental protein coverage: | 60.81 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LSKLAE-TTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPV |
LSKLAE..T.KVKQ.F..................K...............ILPFDHTRVVLHDGDPNEPV | |
Retrocopy | LSKLAE>NTIKVKQAFGKNLRHYNNRSANFSTAEKRVKGKXXXXXXXXXXILPFDHTRVVLHDGDPNEPV |
Parental | SDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYW |
SD.INANIIMPEFE.KCNNSKPKKSYIATQGCLQN.VNDFWRMVFQENSRVIVMTTK.VE.GKSKCVKYW | |
Retrocopy | SDDINANIIMPEFEIKCNNSKPKKSYIATQGCLQNMVNDFWRMVFQENSRVIVMTTKQVESGKSKCVKYW |
Parental | PDEYALKEYGVMRVRNVKESAAHDYTLRELKLSK-GQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEE |
P.EYALKEYG.MRVRNV.ESAAH.Y.LRELKLSK.GQ.N.ER.VWQYHF.TWPDHG.P.DP.GVLDFLEE | |
Retrocopy | PGEYALKEYGIMRVRNVRESAAHNYMLRELKLSKVGQVNKERMVWQYHFWTWPDHGMPIDPRGVLDFLEE |
Parental | VHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQY |
VHHKQE.IM.A.PVVVHCSAGIGRTGT..VIDILIDI.REKGVDCDIDV.KTIQMV.SQRSGMVQTEAQY | |
Retrocopy | VHHKQERIMHARPVVVHCSAGIGRTGTYVVIDILIDINREKGVDCDIDVLKTIQMVQSQRSGMVQTEAQY |
Parental | RFIYMAVQHYIETLQRRIEEEQKSKRKGHEYTNIKYSLADQTSGDQSPLPPCTPTPPCAEMREDSARVYE |
RFIYMAVQHY.ETLQRR.EEEQKSKRKGHEYTNIKYSLADQTSGDQSPLPPCTPTP.CAEMREDSARV.E | |
Retrocopy | RFIYMAVQHYTETLQRRTEEEQKSKRKGHEYTNIKYSLADQTSGDQSPLPPCTPTPRCAEMREDSARV*E |
Parental | NVGLMQQQKSFR |
NVGL.QQQKSFR | |
Retrocopy | NVGLTQQQKSFR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 68 .95 RPM |
SRP007412_cerebellum | 0 .12 RPM | 26 .75 RPM |
SRP007412_heart | 0 .15 RPM | 25 .26 RPM |
SRP007412_kidney | 0 .07 RPM | 16 .21 RPM |
SRP007412_liver | 0 .06 RPM | 7 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012464 | 1 retrocopy | |
Homo sapiens | ENSG00000179295 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010689 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013253 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000078 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004976 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000008983 | 3 retrocopies |