RetrogeneDB ID: | retro_mmul_1792 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:126136466..126137478(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000010023 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTPN11 | ||
Ensembl ID: | ENSMMUG00000013253 | ||
Aliases: | PTPN11, SHP2 | ||
Description: | tyrosine-protein phosphatase non-receptor type 11 [Source:RefSeq peptide;Acc:NP_001248038] |
Percent Identity: | 86.26 % |
Parental protein coverage: | 57. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | RRWFHPNITGVEAE-NLLLTRGVDGSFLARPSK-SNPGDFTLSVRRNGAVTHIKIQNTG-DYYDLYGGEK |
R.WFHPN..GVEAE.NLLLTRGVDGS.LA.PSK.SNPGDFT.SVRRNGAVTHIKIQNT..DY.D.Y.G.K | |
Retrocopy | RQWFHPNVSGVEAE>NLLLTRGVDGSILASPSK<SNPGDFTCSVRRNGAVTHIKIQNTV<DY*DPYRGKK |
Parental | FATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRES |
FATLAELVQYYMEHH.QLKEKNGD.IELKYPLN.ADPTSERWF.GHL..KEAEKLLTEKGKHGSFL.RES | |
Retrocopy | FATLAELVQYYMEHHRQLKEKNGDIIELKYPLNYADPTSERWFPGHLFRKEAEKLLTEKGKHGSFLIRES |
Parental | QSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVL |
QSHPGDFVLSVRTGDDK.ES.DGKSKVTHV.IRCQELKYD.GGGERFDSLTDLV..YKKNPM.ETLGTVL | |
Retrocopy | QSHPGDFVLSVRTGDDKRESDDGKSKVTHVTIRCQELKYDIGGGERFDSLTDLVKRYKKNPMLETLGTVL |
Parental | QLKQPLNTTRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKN-KNRY |
.LKQPLN.T.IN.AE.ESRV.ELS.LAETTDKV.QGFWEEFETL.QQECKLLYSRKEGQRQENKN..N.Y | |
Retrocopy | *LKQPLNMTCINVAETESRV*ELSTLAETTDKVQQGFWEEFETLKQQECKLLYSRKEGQRQENKN<LNWY |
Parental | KNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDF |
KNILPFDH.RVVLHDGDP.EP.S.YINANIIMPEFETKC.NSKP.KS.IATQGCLQNTVNDF | |
Retrocopy | KNILPFDHARVVLHDGDPSEPISGYINANIIMPEFETKCKNSKPRKSCIATQGCLQNTVNDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 106 .78 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 85 .36 RPM |
SRP007412_cerebellum | 0 .00 RPM | 55 .47 RPM |
SRP007412_heart | 0 .00 RPM | 48 .93 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .62 RPM |
SRP007412_liver | 0 .00 RPM | 10 .25 RPM |
SRP007412_testis | 0 .04 RPM | 8 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3670 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012464 | 1 retrocopy | |
Homo sapiens | ENSG00000179295 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010689 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013253 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000003120 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000078 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004976 | 4 retrocopies |