RetrogeneDB ID: | retro_pabe_2205 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:25788137..25789076(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTPN11 | ||
Ensembl ID: | ENSPPYG00000004976 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase, non-receptor type 11 [Source:HGNC Symbol;Acc:9644] |
Percent Identity: | 85.35 % |
Parental protein coverage: | 52.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQEN |
.NILPFDH.RVVLH.GDP.E.VSDYINANII.PEFETKCNN.KPKKSYIATQGCLQNT.NDFW..VFQEN | |
Retrocopy | QNILPFDH-RVVLHNGDPSETVSDYINANIIVPEFETKCNNLKPKKSYIATQGCLQNTANDFWWIVFQEN |
Parental | SRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSK-GQGNTERTVWQYH |
S.VIVMT.KEVERGKSKCVKYWPDEYA.KEYG.M.VRNVKESA.HDY.LRELKLSK.G.GN.ER.VWQYH | |
Retrocopy | SQVIVMTMKEVERGKSKCVKYWPDEYAVKEYGIMHVRNVKESATHDYKLRELKLSKIGKGNMERMVWQYH |
Parental | FRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDID |
F.TW..HGVP.D..G.L.FL.EVH.KQ.SIMDAG.VVVHCSAGIG.TGTFIVIDILIDIIREKGVDC.ID | |
Retrocopy | FWTWLYHGVPCDSKGMLHFLDEVHRKQDSIMDAGLVVVHCSAGIGQTGTFIVIDILIDIIREKGVDCEID |
Parental | VPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETLQRRIEEEQKSKRKGHEYTNIKYSLADQTSGDQSP |
VPKTIQMV.SQRS.MVQTEAQYRFIYMAVQH.IETLQRRIEEEQKSKRKGHE.TNIKYSL.DQTSGDQSP | |
Retrocopy | VPKTIQMVQSQRSEMVQTEAQYRFIYMAVQHHIETLQRRIEEEQKSKRKGHECTNIKYSLVDQTSGDQSP |
Parental | LPPCTPTPPCAEMREDSARVYENVGLMQQQKSFR |
L.P.TP.PPCAEMRE.SARVYENVGLMQQQK..R | |
Retrocopy | LLPYTPMPPCAEMREESARVYENVGLMQQQKHLR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .22 RPM | 68 .95 RPM |
SRP007412_cerebellum | 0 .85 RPM | 26 .75 RPM |
SRP007412_heart | 0 .12 RPM | 25 .26 RPM |
SRP007412_kidney | 0 .03 RPM | 16 .21 RPM |
SRP007412_liver | 0 .00 RPM | 7 .86 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2823 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012464 | 1 retrocopy | |
Homo sapiens | ENSG00000179295 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010689 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013253 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000078 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004976 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000008983 | 3 retrocopies |