Parental gene: | ARPC1A, ENSCJAG00000015859 |
| Aliases: | None |
| Description: | actin related protein 2/3 complex, subunit 1A, 41kDa [Source:HGNC Symbol;Acc:703] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 2:12607109..12648238(-) |
>ENSCJAG00000015859
GCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCCTGTCTGGACTCCCCGGACCCCAGCTTTTTCTCCTTTGAA
AACACTAAGAATAATGTCACTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACCCAGA
TTGCCCTCAGTCCCAATAATCACGAAGTACATATCTATAAGAAGAACGGGAGCCAGTGGGTAAAAGCTCATGAACTCAAG
GAACACAATGGACACATCACAGGTATTGACTGGGCTCCCAAGAGCGACCGCATCGTCACTTGTGGGGCAGACCGAAATGC
CTATGTCTGGAGTCAGAAAGATGGTATCTGGAAGCCAACCCTCGTGATCCTGAGAATTAATCGTGCAGCTACTTTTGTGA
AGTGGTCCCCTCTAGAGAACAAATTTGCTGTGGGAAGTGGAGCACGACTCATTTCCGTTTGTTACTTTGAGTCTGAAAAT
GACTGGTGGGTGAGCAAGCACATTAAAAAACCGATTCGCTCCACAGTCCTCAGCTTGGATTGGCATCCCAACAACGTTTT
GCTGGCAGCAGGATCATGTGACTTCAAATGCAGAGTGTTTTCTGCGTACATTAAAGAAGTGGATGAAAAGCCAGCCAGCA
CGCCCTGGGGTAGCAAAATGCCTTTTGGGCAGCTGATGTCAGAGTTTGGTGGCAGTGGCACTGGCGGCTGGGTCCACGGG
GTCAGCTTCTCTGCCAGTGGGAGCCGCCTGGCCTGGGTCAGCCACGACAGCACTGTGTCTGTTGCTGATGCCTCAAAAAG
TGTGCAGGTCTCAACTCTGAAGACTGAGTTCCTGCCACTCCTGAGCGTGTCATTTGTCTCGGAGAACAGTGTTGTGGCTG
CTGGCCATGACTGCTGCCCAATGCTCTTTAACTATGATGACCGTGGCTGCCTGACCTTCGTCTCTAAGTTAGACATTCCA
AAACAGAGCATCCAACGCAACATGTCTGCCATGGAACGCTTCCGCAACATGGACAAGAGGGCCACGACTGAGGACCGCAA
CACGGCCTTGGAAACGCTGCACCAGAATAGCATAACTCAAGTCTCTATTTATGAGGTGGACAAGCAAGATTGTCGCAAAT
TTTGCACTACTGGCATCGATGGAGCCATGACAATTTGGGATTTCAAGACCCTCGAGTCTTCCATCCAGGGCCTCCGGATA
ATGTGA
GCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCCTGTCTGGACTCCCCGGACCCCAGCTTTTTCTCCTTTGAA
AACACTAAGAATAATGTCACTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACCCAGA
TTGCCCTCAGTCCCAATAATCACGAAGTACATATCTATAAGAAGAACGGGAGCCAGTGGGTAAAAGCTCATGAACTCAAG
GAACACAATGGACACATCACAGGTATTGACTGGGCTCCCAAGAGCGACCGCATCGTCACTTGTGGGGCAGACCGAAATGC
CTATGTCTGGAGTCAGAAAGATGGTATCTGGAAGCCAACCCTCGTGATCCTGAGAATTAATCGTGCAGCTACTTTTGTGA
AGTGGTCCCCTCTAGAGAACAAATTTGCTGTGGGAAGTGGAGCACGACTCATTTCCGTTTGTTACTTTGAGTCTGAAAAT
GACTGGTGGGTGAGCAAGCACATTAAAAAACCGATTCGCTCCACAGTCCTCAGCTTGGATTGGCATCCCAACAACGTTTT
GCTGGCAGCAGGATCATGTGACTTCAAATGCAGAGTGTTTTCTGCGTACATTAAAGAAGTGGATGAAAAGCCAGCCAGCA
CGCCCTGGGGTAGCAAAATGCCTTTTGGGCAGCTGATGTCAGAGTTTGGTGGCAGTGGCACTGGCGGCTGGGTCCACGGG
GTCAGCTTCTCTGCCAGTGGGAGCCGCCTGGCCTGGGTCAGCCACGACAGCACTGTGTCTGTTGCTGATGCCTCAAAAAG
TGTGCAGGTCTCAACTCTGAAGACTGAGTTCCTGCCACTCCTGAGCGTGTCATTTGTCTCGGAGAACAGTGTTGTGGCTG
CTGGCCATGACTGCTGCCCAATGCTCTTTAACTATGATGACCGTGGCTGCCTGACCTTCGTCTCTAAGTTAGACATTCCA
AAACAGAGCATCCAACGCAACATGTCTGCCATGGAACGCTTCCGCAACATGGACAAGAGGGCCACGACTGAGGACCGCAA
CACGGCCTTGGAAACGCTGCACCAGAATAGCATAACTCAAGTCTCTATTTATGAGGTGGACAAGCAAGATTGTCGCAAAT
TTTGCACTACTGGCATCGATGGAGCCATGACAATTTGGGATTTCAAGACCCTCGAGTCTTCCATCCAGGGCCTCCGGATA
ATGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 24 .94 RPM |
| SRP051959_skeletal_muscle | 13 .69 RPM |
| SRP051959_lymph_node | 20 .11 RPM |
| SRP051959_lung | 33 .19 RPM |
| SRP051959_liver | 28 .98 RPM |
| SRP051959_kidney | 25 .87 RPM |
| SRP051959_heart | 22 .91 RPM |
| SRP051959_colon | 48 .35 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006322 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000004242 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000015849 | within_species_paralog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000001777 | ortholog_one2one | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000016059 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000016467 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000241685 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000014024 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000005609 | ortholog_one2one | 8 retrogenes | |
| Myotis lucifugus | ENSMLUG00000010912 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000019342 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000001303 | ortholog_one2one | 9 retrogenes | |
| Mus musculus | ENSMUSG00000029621 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010852 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000003944 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000010870 | ortholog_one2one | 6 retrogenes | |
| Pongo abelii | ENSPPYG00000025816 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000033819 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000010673 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000001660 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000011381 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2141 | 77.92 | 76.06 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2165 | 80.26 | 75.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2263 | 96.26 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000015859 retrocopies