Parental gene:

ARPC1A, ENSCPOG00000001777

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_30:5515462..5544989(-)


>ENSCPOG00000001777
GCGTCGACTGACCAGAGTCCGCGAATTCTCCGCTGCGAGCCCCTCCAGACCGCCCAGACCTCAATTTATTGCAGCTTTCT
ATCCTTTGAAAACACTAAGAATATGTCCCTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGAGACC
GTACCCAAATTGCCCTTAGCCCCAATAATCACGAAGTTCACATCTATAAGAAGAATGGGAGCCAGTGGGTGAAAGCTCAT
GAACTCAAGGAGCACAACGGACACATCACAGGAATTGACTGGGCTCCCAAGAGCGATCGCATTGTCACTTGTGGAGCCGA
CCGCAATGCCTATGTCTGGAGTCAGAAAGATGGTGTCTGGAAGCCAACCTTGGTGATCCTGAGGATTAACCGCGCAGCCA
CTTTTGTGAAGTGGTCCCCTCTAGAGAACAAATTTGCTGTGGGAAGTGGAGCACGACTCATTTCTGTTTGTTACTTTGAA
TCTGAAAATGACTGGTGGGTAAGCAAGCACATTAAAAAGCCGATTCGCTCTACAGTCCTCAGCTTGGATTGGCATCCCAA
CAATGTTTTACTTGCAGCAGGATCCTGTGATTTCAAGTGCAGAGTGTTTTCTGCCTACATTAAAGAAGTGGATGAAAAGC
CAGCCAGTACACCCTGGGGCAGCAAGATGCCTTTTGGCCAACTGATGTCAGAGTTTGGTGGCAGTGGCACTGGTGGCTGG
GTCCATGGAGTCAGCTTCTCTGCCAGTGGGAGTCGTCTGGCTTGGGTCAGCCATGACAGTACTGTGTCTGTTGCTGATGC
CTCAAAAAGTGTACAGGTCTCCACTCTGAAAACCGAGTTCCTGCCACTCCTGAGTGTGTCATTTGTCTCTGAAAACAGTG
TTGTGGCTGCTGGCCATGACTGTTGTCCGATGCTCTTTAACTATGATGACCGCGGCTGCTTGACCTTTGTCTCCAAGCTT
GACATTCCAAAACAGAGCATCCAGCGCAACATGTCTGCCATGGAACGCTTCCGCAACATGGACAAAAGGGCGACGACTGA
GGACCGTAATACCGCTTTGGAGACACTGCACCAGAATAGCATCACTCAAGTGTCTATTTACGAGGTGGACAAGCAAGATT
GTCGCAAATTTTGCACTACTGGCATCGATGGAGCCATGACAATTTGGGACTTCAAGACCTTAGAGTCTTCGATCCAAGGC
CTCCGGATAATGTGA

Library Parental gene expression (RPM)
SRP017611_liver 17 .06 RPM
SRP017611_kidney 43 .55 RPM
SRP017611_brain 32 .61 RPM
SRP040447_lung 57 .63 RPM
SRP040447_skeletal_muscle 22 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006322 ortholog_one2one 1 retrogene
retro_amel_1431,
Bos taurus ENSBTAG00000004242 ortholog_one2one 1 retrogene
retro_btau_1486,
Callithrix jacchus ENSCJAG00000015859 ortholog_one2one 3 retrogenes
retro_cjac_2141, retro_cjac_2165, retro_cjac_2263,
Dipodomys ordii ENSDORG00000016059 ortholog_one2one 1 retrogene
retro_dord_593,
Equus caballus ENSECAG00000016467 ortholog_one2one 1 retrogene
retro_ecab_185,
Homo sapiens ENSG00000241685 ortholog_one2one 2 retrogenes
retro_hsap_2010, retro_hsap_3191,
Loxodonta africana ENSLAFG00000014024 ortholog_one2one 1 retrogene
retro_lafr_1006,
Macropus eugenii ENSMEUG00000005609 ortholog_one2one 8 retrogenes
retro_meug_1033, retro_meug_1081, retro_meug_1495, retro_meug_1668, retro_meug_1755, retro_meug_1912, retro_meug_2179, retro_meug_492,
Myotis lucifugus ENSMLUG00000010912 ortholog_one2one 1 retrogene
retro_mluc_1432,
Macaca mulatta ENSMMUG00000019342 ortholog_one2one 2 retrogenes
retro_mmul_1383, retro_mmul_2012,
Monodelphis domestica ENSMODG00000001303 ortholog_one2one 9 retrogenes
retro_mdom_1360, retro_mdom_1380, retro_mdom_1438, retro_mdom_1551, retro_mdom_1796, retro_mdom_1917, retro_mdom_686, retro_mdom_699, retro_mdom_808,
Mus musculus ENSMUSG00000029621 ortholog_one2one 1 retrogene
retro_mmus_1373,
Nomascus leucogenys ENSNLEG00000010852 ortholog_one2one 2 retrogenes
retro_nleu_1663, retro_nleu_2069,
Oryctolagus cuniculus ENSOCUG00000003944 ortholog_one2one 1 retrogene
retro_ocun_1130,
Otolemur garnettii ENSOGAG00000010870 ortholog_one2one 6 retrogenes
retro_ogar_1547, retro_ogar_2690, retro_ogar_2697, retro_ogar_381, retro_ogar_610, retro_ogar_656,
Pongo abelii ENSPPYG00000025816 ortholog_one2one 4 retrogenes
retro_pabe_1647, retro_pabe_1648, retro_pabe_2537, retro_pabe_2647,
Pan troglodytes ENSPTRG00000033819 ortholog_one2one 2 retrogenes
retro_ptro_1340, retro_ptro_2253,
Sarcophilus harrisii ENSSHAG00000010673 ortholog_one2one 2 retrogenes
retro_shar_180, retro_shar_727,
Ictidomys tridecemlineatus ENSSTOG00000001660 ortholog_one2one 1 retrogene
retro_itri_1834,
Tupaia belangeri ENSTBEG00000011381 ortholog_one2one 3 retrogenes
retro_tbel_1237, retro_tbel_1241, retro_tbel_82,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_452 97.05 100.00
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2. retro_cpor_981 90.12 99.50
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Download FASTA sequences of all ENSCPOG00000001777 retrocopies