RetrogeneDB ID: | retro_ecab_185 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:118997641..118998597(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000012465 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC1A | ||
Ensembl ID: | ENSECAG00000016467 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 1A, 41kDa [Source:HGNC Symbol;Acc:703] |
Percent Identity: | 89.69 % |
Parental protein coverage: | 83.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | NGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLIS |
N.HITGI.WAPKSD.IVTCGADRNAYVWSQKDGVWKPTLVILRI..AATFVKWSPLENKFAVGSGARLIS | |
Retrocopy | NRHITGINWAPKSDHIVTCGADRNAYVWSQKDGVWKPTLVILRIDVAATFVKWSPLENKFAVGSGARLIS |
Parental | VCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPA-STPWGSKMP |
.CYFESEND.WVSKHIKKP..STVLSLDWHPNNVLLAAGS.DFKCRVFSAYIK.V.EKPA..TPWGSKMP | |
Retrocopy | ICYFESENDLWVSKHIKKPVHSTVLSLDWHPNNVLLAAGSYDFKCRVFSAYIKKVYEKPA<RTPWGSKMP |
Parental | FGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSV |
FGQLMSEFGGSGTGG.VHGV.FSASGSRLAWVSHDST.SVADASKSVQ.STLKTEFLPLLSVSFVSENSV | |
Retrocopy | FGQLMSEFGGSGTGGCVHGVRFSASGSRLAWVSHDSTASVADASKSVQISTLKTEFLPLLSVSFVSENSV |
Parental | VAAGHDCCPMLFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV |
.AAGHD.CPMLFNY.DRGCLTF.SKLDIPKQSIQ...SAME.F.N.D.RATTEDRNTALETLHQNSITQV | |
Retrocopy | AAAGHDSCPMLFNYYDRGCLTFFSKLDIPKQSIQHHVSAMEHFCNVDQRATTEDRNTALETLHQNSITQV |
Parental | SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM |
SI.EVDKQDCRKFC.TGIDGAM.IW.FKTLESSIQGLRIM | |
Retrocopy | SINEVDKQDCRKFCMTGIDGAMIIWNFKTLESSIQGLRIM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 90 .49 RPM |
SRP021940_cerebellum | 0 .10 RPM | 95 .61 RPM |
SRP021940_embryo | 0 .13 RPM | 94 .59 RPM |
SRP021940_placental_villous | 0 .10 RPM | 105 .27 RPM |
SRP021940_synovial_membrane | 0 .19 RPM | 96 .41 RPM |
SRP021940_testis | 0 .26 RPM | 86 .07 RPM |