Parental gene:

SYCP3, ENSCPOG00000001202

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_9:1129371..1137579(+)


>ENSCPOG00000001202
ATGGTGCCCAGCGGGAAGAAGCAGCCCGGCGAGCAGCCCGCCAGCGCCTACGCCGCCGAGAAGGACGAGCGCGAGCTGAG
CGGCGGCGGCGCCCGCAGGTGCGCGGAGGCCGAGGAAAAGGTCCCGGCCATGGACAAGCGCGGGAAGAAGCGGTCCTCGG
CGGAGCTCCTGGAGGACATGGGTGGTGAAGTGCAGAATATGCTGGAAAAATTCGGAGCTGACATTAACAAGGCTCTCCTT
GTCAAGAGAAAAAGACTAGAAATGTATACCAAGGCTTCCTTCAAATCCAGTAGCCAGAAAATTGAACATGTTTGGAAAAC
TCAACAAGAACAAAGGCAGAAACTTAACCAAGAGTACTCGGAGCAGTTCCTGGCTGTGTTTCAGCAGTGGGACACCGACC
TGAAGAAGGCAGAGGAACAGGAGGAGAAGCTGGTGAGTATAATGCGACAACAACAAAAGGTTTTCCAACAATCTAGAATT
GTTCAGAACCAGAGACTGAAAACAGTTAGACAGCTATACGAGCAGTACATAAAGAGTTTGGAGGACTTGGAAAAGAATCA
CGACAGTCTCCTTAGTGGCACACAGAATGAACTTAAGAAAGAAATGGCTATGTTGCAAAAGAAGATTATGATGGAAACTC
AGCAGCAAGAGATGGCAAGTGTCCGCAAGTCTCTTCAGTCCATGTTACTCTGA

Library Parental gene expression (RPM)
SRP017611_liver 2 .39 RPM
SRP017611_kidney 1 .99 RPM
SRP017611_brain 0 .98 RPM
SRP040447_lung 1 .34 RPM
SRP040447_skeletal_muscle 0 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013389 ortholog_one2one 2 retrogenes
retro_chof_1384, retro_chof_2693,
Callithrix jacchus ENSCJAG00000001658 ortholog_one2one 1 retrogene
retro_cjac_2710,
Dasypus novemcinctus ENSDNOG00000017387 possible_ortholog 2 retrogenes
retro_dnov_2623, retro_dnov_739,
Dasypus novemcinctus ENSDNOG00000017624 ortholog_one2many 3 retrogenes
retro_dnov_2294, retro_dnov_2402, retro_dnov_420,
Echinops telfairi ENSETEG00000007664 ortholog_one2many 1 retrogene
retro_etel_1510,
Myotis lucifugus ENSMLUG00000010711 ortholog_one2one 2 retrogenes
retro_mluc_1098, retro_mluc_1839,
Mus musculus ENSMUSG00000067764 possible_ortholog 1 retrogene
retro_mmus_1085,
Mus musculus ENSMUSG00000072479 possible_ortholog 1 retrogene
retro_mmus_1782,
Otolemur garnettii ENSOGAG00000024543 ortholog_one2one 1 retrogene
retro_ogar_633,
Rattus norvegicus ENSRNOG00000017224 possible_ortholog 1 retrogene
retro_rnor_1728,
Ictidomys tridecemlineatus ENSSTOG00000001853 ortholog_one2one 1 retrogene
retro_itri_931,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_686 73.60 74.35
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Download FASTA sequences of all ENSCPOG00000001202 retrocopies