Parental gene: | PCBP1, ENSEEUG00000001077 |
| Aliases: | None |
| Description: | poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | GeneScaffold_8358:2876..32900(+) |
>ENSEEUG00000001077
ATGAACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCCGACTACTTATGCATGGAAAGGAAGTTGGCAG
TATCATTGGAAAGAAAGGAGAATCAGTTAAGAAGATGCGTGAAGAGAGTGGTGCACGAATCAACATCTCAGAAGGGAATT
GTCCTGAGAGAATTATCACCTTGGCTGGACCCACTAATGCCATCTTCAAAGCTTTTGCTATGATCATCGACAAACTGGAA
GAGGACATCAGCAGCTCTATGACGAATAGCACAGCTGCCAGTAGACCCCCAGTCACCCTGAGGCTGGTGGTCCCTGCTAG
TCAGTGTGGCTCTCTCATCGGAAAAGGTGGTTGCAAGATCAAGGAAATACGAGAGAGTACAGGGGCTCAGGTCCAAGTGG
CCGGGGATATGCTTCCCAATTCAACTGAGCGAGCCATTACTATTGCTGGCATTCCGCAATCCATCATTGAGTGTGTGAAA
CAGATTTGCGTGGTCATGTTGGAGTTTATTTTATTCTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTC
CAGTTCTCCAGTCATCTTTGCAGGTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCC
CGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCTCTAGAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAG
CCAGATACCAAGCTGCACCATTGCATGCAACAGTCTCATTTCCCCATGACGCATGGCAACACCGGATTCAGTGGCATTGA
ATCCAGCTCTCCAGAGGTGAAAGGCTATTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTGATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTACCATCACTGGATCTGCTGCCAGCATTAGCCTGGCCCA
TTATCTAATCAATGTCAGGCTTTCCTCGGAGACGGGTGGCATGGGGAGCAGCTAG
ATGAACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCCGACTACTTATGCATGGAAAGGAAGTTGGCAG
TATCATTGGAAAGAAAGGAGAATCAGTTAAGAAGATGCGTGAAGAGAGTGGTGCACGAATCAACATCTCAGAAGGGAATT
GTCCTGAGAGAATTATCACCTTGGCTGGACCCACTAATGCCATCTTCAAAGCTTTTGCTATGATCATCGACAAACTGGAA
GAGGACATCAGCAGCTCTATGACGAATAGCACAGCTGCCAGTAGACCCCCAGTCACCCTGAGGCTGGTGGTCCCTGCTAG
TCAGTGTGGCTCTCTCATCGGAAAAGGTGGTTGCAAGATCAAGGAAATACGAGAGAGTACAGGGGCTCAGGTCCAAGTGG
CCGGGGATATGCTTCCCAATTCAACTGAGCGAGCCATTACTATTGCTGGCATTCCGCAATCCATCATTGAGTGTGTGAAA
CAGATTTGCGTGGTCATGTTGGAGTTTATTTTATTCTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTC
CAGTTCTCCAGTCATCTTTGCAGGTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCC
CGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCTCTAGAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAG
CCAGATACCAAGCTGCACCATTGCATGCAACAGTCTCATTTCCCCATGACGCATGGCAACACCGGATTCAGTGGCATTGA
ATCCAGCTCTCCAGAGGTGAAAGGCTATTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTGATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTACCATCACTGGATCTGCTGCCAGCATTAGCCTGGCCCA
TTATCTAATCAATGTCAGGCTTTCCTCGGAGACGGGTGGCATGGGGAGCAGCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 143 .25 RPM |
| SRP017611_kidney | 322 .00 RPM |
| SRP017611_brain | 167 .11 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000000967 | possible_ortholog | 2 retrogenes | |
| Equus caballus | ENSECAG00000022389 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000197111 | possible_ortholog | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000011651 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000006608 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000022490 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_218 | 88.83 | 54.12 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_655 | 88.83 | 54.12 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000001077 retrocopies