RetrogeneDB ID: | retro_eeur_218 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_212186:1706..2282(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP1 | ||
Ensembl ID: | ENSEEUG00000001077 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647] |
Percent Identity: | 88.83 % |
Parental protein coverage: | 54.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MNTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFK |
M.TGVIEG.LNVTLTIRLLMHGKEV.SIIGKKGESVKKMREE.GARINISEGNCPERIITLAGPTNAIFK | |
Retrocopy | MDTGVIEGRLNVTLTIRLLMHGKEVVSIIGKKGESVKKMREE-GARINISEGNCPERIITLAGPTNAIFK |
Parental | AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN |
AFAMI.DKLEEDISSS.T.STAA.RPPVTLRLVVPASQCGSLI.KGGCKIKEIRESTGAQVQVAGDMLPN | |
Retrocopy | AFAMITDKLEEDISSSLTKSTAAGRPPVTLRLVVPASQCGSLIRKGGCKIKEIRESTGAQVQVAGDMLPN |
Parental | STERAITIAGIPQSIIECVKQICVVMLEFILFSPPKGVTIPYRPKPSSSPVIFAGGQ |
ST...ITIAGIPQSIIE.VK.ICVVMLE....SP.KGVTIPY.P.PSSSPVIFA.GQ | |
Retrocopy | STQQTITIAGIPQSIIE*VKRICVVMLE----SPLKGVTIPYWPQPSSSPVIFADGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .77 RPM | 167 .11 RPM |
SRP017611_kidney | 2 .06 RPM | 322 .00 RPM |
SRP017611_liver | 1 .77 RPM | 143 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000000967 | 2 retrocopies | |
Equus caballus | ENSECAG00000022389 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001077 | 2 retrocopies |
retro_eeur_218 , retro_eeur_655,
|
Homo sapiens | ENSG00000197111 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000011651 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006608 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022490 | 3 retrocopies |