Parental gene: | UCHL1, ENSEEUG00000002185 |
| Aliases: | None |
| Description: | ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:12513] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | GeneScaffold_5427:7350..21344(+) |
>ENSEEUG00000002185
ATGCAGCTCAAGCCGATGGAGATCAACCCCGAGATGCTGAACAAANNNNNNNNNNNNNNNNNNNNNNNCGGCCAGTGGCG
CTTCGTGGACGTGTTGGGCCTGGAGGATGAGTCGCTGGGTTCAGTGCCGGCGCCCGCCTGCGCACTGCTGCTGCTGTTTC
CCCTCACAGCCCAGCATGAGAACTTCAGGAAAAAACAGATTGAAGAACTGAAGGGACAAGAAGTCAGTCCTAAAGTCTAC
TTTATGAAGCAGACCATTGGTAACTCCTGTGGAACCATCGGACTGATACATGCAGTGGCCAATAATCAAGACAAGCTGGA
GTTTGAGGATGGGTCAGTCCTGAAACAGTTTCTTTCTGAAACAGAGAAGTTATCCCCTGAAGACAGGGCAAAATGCTTTG
AAAAGAATGAGGCCATTCAGGCAGCCCATGATGCTGTGGCACAGGAAGGCCAATGTCGGGTAGATGATAAGGTGAACTTT
CATTTTATTCTGTTCAACAATGTGGATGGCCACCTCTATGAACTCGATGGACGAATGCCTTTCCCCGTGAACCATGGCTC
CAGTTCTGAGGACTCACTGATGCAGGATGCTGCCAAGGTGTGCAGAGAATTCACTGAGCGTGAGCAAGGAGAAGTCCGCT
TTTCTGCTGTGGCCCTCTGCAAGGCCGCCTAA
ATGCAGCTCAAGCCGATGGAGATCAACCCCGAGATGCTGAACAAANNNNNNNNNNNNNNNNNNNNNNNCGGCCAGTGGCG
CTTCGTGGACGTGTTGGGCCTGGAGGATGAGTCGCTGGGTTCAGTGCCGGCGCCCGCCTGCGCACTGCTGCTGCTGTTTC
CCCTCACAGCCCAGCATGAGAACTTCAGGAAAAAACAGATTGAAGAACTGAAGGGACAAGAAGTCAGTCCTAAAGTCTAC
TTTATGAAGCAGACCATTGGTAACTCCTGTGGAACCATCGGACTGATACATGCAGTGGCCAATAATCAAGACAAGCTGGA
GTTTGAGGATGGGTCAGTCCTGAAACAGTTTCTTTCTGAAACAGAGAAGTTATCCCCTGAAGACAGGGCAAAATGCTTTG
AAAAGAATGAGGCCATTCAGGCAGCCCATGATGCTGTGGCACAGGAAGGCCAATGTCGGGTAGATGATAAGGTGAACTTT
CATTTTATTCTGTTCAACAATGTGGATGGCCACCTCTATGAACTCGATGGACGAATGCCTTTCCCCGTGAACCATGGCTC
CAGTTCTGAGGACTCACTGATGCAGGATGCTGCCAAGGTGTGCAGAGAATTCACTGAGCGTGAGCAAGGAGAAGTCCGCT
TTTCTGCTGTGGCCCTCTGCAAGGCCGCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 0 .48 RPM |
| SRP017611_kidney | 3 .38 RPM |
| SRP017611_brain | 197 .40 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000019346 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000012347 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000154277 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000008809 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000013774 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010138 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017176 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000001353 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000016009 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000008305 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_150 | 95.07 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_573 | 62.50 | 52.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_eeur_598 | 52.48 | 88.34 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000002185 retrocopies