RetrogeneDB ID: | retro_hsap_781 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:56263353..56263889(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000254411 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UCHL1 | ||
Ensembl ID: | ENSG00000154277 | ||
Aliases: | UCHL1, HEL-117, NDGOA, PARK5, PGP 9.5, PGP9.5, PGP95, Uch-L1 | ||
Description: | ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:12513] |
Percent Identity: | 62.09 % |
Parental protein coverage: | 78.48 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | CALLLLFPLTAQHENFRKKQIEELKGQEV-SPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFE-DGSVL |
C..L........HENFRKK.IEELK.QEV.SPK.YFMKQ.IGN.C.TI.LI.AVA.NQDK..FE..GS.L | |
Retrocopy | CQQLPTVYIRSPHENFRKKLIEELKRQEV<SPKGYFMKQSIGNFCHTIRLI*AVADNQDKPKFE<GGSIL |
Parental | KQFLSETEKMSP-EDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPV |
K.F.SE.EK.....D..K.FE.N...QA..DA.A..GQC..DDKVNF.FILF.N.DGHL.ELDG.MPFPV | |
Retrocopy | KYFISEVEKNTT>VDSTKSFENNKTFQAVYDAIA*QGQCQADDKVNFCFILFSNMDGHLSELDG*MPFPV |
Parental | NHGASSEDTLLKD----AAKVCREFTEREQGEVRFSAVALCK |
N.GASSED.LL.D....AAKVCR.FTE.E......SAV.L.K | |
Retrocopy | NYGASSEDSLLQDCRD*AAKVCRKFTEEEGEKGSLSAVTLSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 10 .85 RPM |
bodymap2_adrenal | 0 .00 RPM | 5 .06 RPM |
bodymap2_brain | 0 .00 RPM | 469 .22 RPM |
bodymap2_breast | 0 .00 RPM | 83 .23 RPM |
bodymap2_colon | 0 .00 RPM | 43 .35 RPM |
bodymap2_heart | 0 .00 RPM | 5 .02 RPM |
bodymap2_kidney | 0 .00 RPM | 67 .00 RPM |
bodymap2_liver | 0 .00 RPM | 0 .34 RPM |
bodymap2_lung | 0 .00 RPM | 7 .40 RPM |
bodymap2_lymph_node | 0 .00 RPM | 15 .22 RPM |
bodymap2_ovary | 0 .00 RPM | 31 .21 RPM |
bodymap2_prostate | 0 .00 RPM | 40 .60 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 3 .89 RPM |
bodymap2_testis | 0 .04 RPM | 23 .11 RPM |
bodymap2_thyroid | 0 .00 RPM | 17 .70 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3028 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019346 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000002185 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000012347 | 1 retrocopy | |
Homo sapiens | ENSG00000154277 | 2 retrocopies |
retro_hsap_781 , retro_hsap_782,
|
Gorilla gorilla | ENSGGOG00000008809 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013774 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010138 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017176 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000001353 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016009 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000008305 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |