RetrogeneDB ID: | retro_eeur_150 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_103060:3219..3888(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UCHL1 | ||
Ensembl ID: | ENSEEUG00000002185 | ||
Aliases: | None | ||
Description: | ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:12513] |
Percent Identity: | 95.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQLKPMEINPEMLNKXXXXXXXXGQWRFVDVLGLEDESLGSVPAPACALLLLFPLTAQHENFRKKQIEEL |
MQLKPMEINPEMLNK.........QWRFVDVLGLEDESLGSVPAPACALLLLFPLTAQHEN.RKKQIEEL | |
Retrocopy | MQLKPMEINPEMLNKVLAQLGVASQWRFVDVLGLEDESLGSVPAPACALLLLFPLTAQHENLRKKQIEEL |
Parental | KGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQ |
KGQEVSPKV.FMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQ | |
Retrocopy | KGQEVSPKVFFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQ |
Parental | AAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGSSSEDSLMQDAAKVCREFTEREQG |
AAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGSSSEDSLMQDAAKVCREFTEREQG | |
Retrocopy | AAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGSSSEDSLMQDAAKVCREFTEREQG |
Parental | EVRFSAVALCKAA |
EVRFSAVALCKAA | |
Retrocopy | EVRFSAVALCKAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 65 .59 RPM | 197 .40 RPM |
SRP017611_kidney | 3 .00 RPM | 3 .38 RPM |
SRP017611_liver | 0 .32 RPM | 0 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019346 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000002185 | 3 retrocopies |
retro_eeur_150 , retro_eeur_573, retro_eeur_598,
|
Echinops telfairi | ENSETEG00000012347 | 1 retrocopy | |
Homo sapiens | ENSG00000154277 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008809 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013774 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010138 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017176 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000001353 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016009 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000008305 | 1 retrocopy |