RetrogeneDB ID: | retro_ggor_648 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:53221403..53221903(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UCHL1 | ||
Ensembl ID: | ENSGGOG00000008809 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60. % |
Parental protein coverage: | 73.09 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | CALLLLFPLTAQHENFRK-KQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDG-SVL |
C..L......A.H.N.RK.K.IEELK.Q..SPK.YFMKQ.IGN.C.TI.LIHA.ANNQDKL.FE.G.S.L | |
Retrocopy | CQHLPTLCIRASHKNLRK<KLIEELKRQGDSPKGYFMKQSIGNFCHTIRLIHAMANNQDKLKFEAG<SIL |
Parental | KQFLSETE-KMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPV |
K.F.S..E.K.SPED..K.FE.N.A.QA...A.....QC..DDKVNF.FILF.N.DGHL.EL.G..PF.V | |
Retrocopy | KYFISDME>KISPEDSTKSFENNKAFQAVYEAIL*QSQCQADDKVNFCFILFSNADGHLSELGG*VPFLV |
Parental | NHGASSEDTLLKD----AAKVCREFTEREQ |
N.GASSED.LL.D....AAKVC..FT..E. | |
Retrocopy | NYGASSEDSLLQDCSD*AAKVCMKFTKEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 911 .80 RPM |
SRP007412_cerebellum | 0 .00 RPM | 105 .35 RPM |
SRP007412_heart | 0 .00 RPM | 2 .94 RPM |
SRP007412_kidney | 0 .00 RPM | 16 .64 RPM |
SRP007412_liver | 0 .00 RPM | 0 .76 RPM |
SRP007412_testis | 0 .00 RPM | 30 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019346 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000002185 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000012347 | 1 retrocopy | |
Homo sapiens | ENSG00000154277 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008809 | 1 retrocopy |
retro_ggor_648 ,
|
Macropus eugenii | ENSMEUG00000013774 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010138 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017176 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000001353 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016009 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000008305 | 1 retrocopy |