RetrogeneDB ID: | retro_eeur_573 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_346849:12251..12611(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UCHL1 | ||
Ensembl ID: | ENSEEUG00000002185 | ||
Aliases: | None | ||
Description: | ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:12513] |
Percent Identity: | 62.5 % |
Parental protein coverage: | 52.47 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | LEDESLGSVPAPACALLLLF--PLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIH-AVA |
.ED..LGS..AP.C.....F..P..............ELKGQEVS.KVYF.KQT.GNSC..I..IH...A | |
Retrocopy | VEDRALGSLLAPTCMFCFCFPSPSSGRNSXXXXXXD*ELKGQEVSSKVYFIKQTAGNSCRAIRQIH*LLA |
Parental | NNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEG |
NNQDKLEFED...LK.FLSETE.LSPE.RAKCFEKNEAI.A.HDAVAQEG | |
Retrocopy | NNQDKLEFEDEKALKKFLSETETLSPEHRAKCFEKNEAI*AVHDAVAQEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 197 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 3 .38 RPM |
SRP017611_liver | 0 .00 RPM | 0 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019346 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000002185 | 3 retrocopies |
retro_eeur_150, retro_eeur_573 , retro_eeur_598,
|
Echinops telfairi | ENSETEG00000012347 | 1 retrocopy | |
Homo sapiens | ENSG00000154277 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008809 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013774 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010138 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017176 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000001353 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016009 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000008305 | 1 retrocopy |