Parental gene: | SHFM1, ENSEEUG00000002237 |
| Aliases: | None |
| Description: | split hand/foot malformation (ectrodactyly) type 1 [Source:HGNC Symbol;Acc:10845] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | GeneScaffold_3350:5320..11075(-) |
>ENSEEUG00000002237
ATGTCGGAGAAAAAGCAGCCGGTGGACTTGGGTCTCCTGGAAGAAGACGACGAGTTTGAAGAGTTCCCCGCGGAAGACTG
GGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATTGGGATGATGACAATGTAGAGGATGATTTTTCCA
ATCAGTTACGAGCTGAACTTGAGAAACATGGTTATAAGATGGAGACCTCATAA
ATGTCGGAGAAAAAGCAGCCGGTGGACTTGGGTCTCCTGGAAGAAGACGACGAGTTTGAAGAGTTCCCCGCGGAAGACTG
GGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATTGGGATGATGACAATGTAGAGGATGATTTTTCCA
ATCAGTTACGAGCTGAACTTGAGAAACATGGTTATAAGATGGAGACCTCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 57 .40 RPM |
| SRP017611_kidney | 94 .89 RPM |
| SRP017611_brain | 44 .96 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000010434 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000018179 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000023254 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000014208 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000026246 | possible_ortholog | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000015337 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000011501 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000016474 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_290 | 82.54 | 88.57 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_586 | 84.72 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000002237 retrocopies