Parental gene:

SHFM1, ENSEEUG00000002237

Aliases:None
Description:split hand/foot malformation (ectrodactyly) type 1 [Source:HGNC Symbol;Acc:10845]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_3350:5320..11075(-)


>ENSEEUG00000002237
ATGTCGGAGAAAAAGCAGCCGGTGGACTTGGGTCTCCTGGAAGAAGACGACGAGTTTGAAGAGTTCCCCGCGGAAGACTG
GGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATTGGGATGATGACAATGTAGAGGATGATTTTTCCA
ATCAGTTACGAGCTGAACTTGAGAAACATGGTTATAAGATGGAGACCTCATAA

Library Parental gene expression (RPM)
SRP017611_brain 44 .96 RPM
SRP017611_kidney 94 .89 RPM
SRP017611_liver 57 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010434 ortholog_one2one 1 retrogene
retro_amel_1234,
Equus caballus ENSECAG00000018179 ortholog_one2one 1 retrogene
retro_ecab_360,
Felis catus ENSFCAG00000023254 ortholog_one2one 2 retrogenes
retro_fcat_1138, retro_fcat_121,
Myotis lucifugus ENSMLUG00000014208 ortholog_one2one 1 retrogene
retro_mluc_948,
Oryctolagus cuniculus ENSOCUG00000026246 possible_ortholog 3 retrogenes
retro_ocun_1324, retro_ocun_452, retro_ocun_77,
Sus scrofa ENSSSCG00000015337 possible_ortholog 1 retrogene
retro_sscr_67,
Ictidomys tridecemlineatus ENSSTOG00000011501 ortholog_one2one 1 retrogene
retro_itri_253,
Tupaia belangeri ENSTBEG00000016474 ortholog_one2one 3 retrogenes
retro_tbel_2837, retro_tbel_2998, retro_tbel_3844,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_290 82.54 88.57
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2. retro_eeur_586 84.72 100.00
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Download FASTA sequences of all ENSEEUG00000002237 retrocopies