RetrogeneDB ID:

retro_fcat_121

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B2:70755537..70755756(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSFCAG00000029338
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000023254
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_121
GTGTCAGAGAAAAAGCAGCTTGTAGGCTTGGGTCTCTTGGAGGAGGATGAGGAGTTCAAGGAGATCCCTGCGGAAGAGTG
GGCTGGTTTAGGTGAAGACGAAGATCCAGATGCACATGTCTCGGAGGATAATTGGGATGATGACAGTGTAGAGGATGACT
TCTCCAATCAGTTACAACCTGAATTAGACAAACATGGTTATAAGATGGAGACCCTGTAG

ORF - retro_fcat_121 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.87 %
Parental protein coverage: 98.57 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSEKKQPVDLGLLEEDDEFEEFPAEDWAGL--DEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHGYKME
.SEKKQ.V.LGLLEED.EF.E.PAE.WAGL..DED.DAHV.EDNWDDD.VEDDFSNQL..EL.KHGYKME
RetrocopyVSEKKQLVGLGLLEEDEEFKEIPAEEWAGLGEDEDPDAHVSEDNWDDDSVEDDFSNQLQPELDKHGYKME
ParentalT
T
RetrocopyT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 16 .99 RPM
SRP017611_kidney 0 .10 RPM 37 .20 RPM
SRP017611_liver 0 .00 RPM 16 .88 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_121 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_121 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 18 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000104341 retrocopy
Canis familiaris ENSCAFG000000021791 retrocopy
Cavia porcellus ENSCPOG000000104021 retrocopy
Equus caballus ENSECAG000000181791 retrocopy
Erinaceus europaeus ENSEEUG000000022372 retrocopies
Echinops telfairi ENSETEG000000197781 retrocopy
Felis catus ENSFCAG00000023254 2 retrocopies
retro_fcat_1138, retro_fcat_121 ,
Myotis lucifugus ENSMLUG000000142081 retrocopy
Oryctolagus cuniculus ENSOCUG000000262463 retrocopies
Sus scrofa ENSSSCG000000153371 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000115011 retrocopy
Tupaia belangeri ENSTBEG000000164743 retrocopies



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