Parental gene:

TUBA1C, ENSEEUG00000004068

Aliases:None
Description:tubulin, alpha 1c [Source:HGNC Symbol;Acc:20768]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_270563:6244..8716(-)


>ENSEEUG00000004068
GGTGAGTGCATCTCTATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAACA
CGGCATCCAGCCTGATGGCCAGATGCCCAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCAGTG
AGACAAGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGACGAAGTTCGCACTGGC
ACCTACCGCCAACTCTTCCACCCTGAGCAGCTTATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGCCACTA
CACCATTGGCAAGGAGATTATTGACCCTGTCTTGGACCGGATTCGGAAACTGGCTGACCAGTGCACAGGGCTTCAGGGCT
TCCTGGTTTTCCACAGCTTTGGCGGGGGAACTGGCTCTGGGTTCACCTCTCTGCTGATGGAGCGTCTCTCTGTCGACTAC
GGCAAGAAGTCCAAGCTCGAATTCTCCATCTACCCAGCCCCCCAGGTCTCCACAGCTGTAGTGGAGCCCTACAACTCCAT
CCTCACCACCCACACCACCCTGGAGCATTGTGACTGTGCCTTCATGGTTGACAATGAAGCCATCTATGACATCTGTTGTA
GAAATCTGGATATTGAACGACCAACCTATACTAACCTCAATCGCCTTATTAGTCAGGTAGTGTCCTCCATCACTGCTTCC
CTCAGGTTTGATGGAGCCCTGAATGTTGACCTGACAGAATTCCAGACCAACCTGGTGCCTTACCCCCGCATCCACTTCCC
TCTGGCCACCTACGCCCCTGTCATCTCCGCTGAGAAAGCCTACCATGAACAGCTTTCTGTTGCAGAGATCACCAATGCGT
GCTTTGAGCCAGCTAACCAGATGGTGAAGTGTGACCCTCGCCATGGTAAATACATGGCCTGCTGCCTGTTGTACCGTGGT
GACGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCAGCATTAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTGCCC
CACTGGCTTCAAAGTTGGCATTAATTACCAGCCTCCCACTGTGGTCCCTGGTGGAGACCTGGCCAAGGTCCAGCGGGCTG
TGTGCATGCTGAGCAACACCACGGCTGTAGCTGAGGCCTGGGCCCGGCTGGACCACAAGTTTGACCTGATGTACGCCAAG
CGTGCCTTTGTTCATTGGTATGTAGGTGAGGGCATGGAGGAGGGAGAGTTTGCTGAGGCCCGTGAGGACATGGCTGCCCT
GGAAAAGGATTATGAGGAGGTTGGAGCAGATAGTGCTGATGGAGATGATGAGGGTGAAGAGTATTAA

Library Parental gene expression (RPM)
SRP017611_liver 84 .73 RPM
SRP017611_kidney 60 .20 RPM
SRP017611_brain 52 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039992 possible_ortholog 1 retrogene
retro_btau_840,
Canis familiaris ENSCAFG00000008661 ortholog_one2one 2 retrogenes
retro_cfam_960, retro_cfam_978,
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Felis catus ENSFCAG00000024852 ortholog_one2one 1 retrogene
retro_fcat_361,
Felis catus ENSFCAG00000028689 possible_ortholog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Oryctolagus cuniculus ENSOCUG00000028032 possible_ortholog 1 retrogene
retro_ocun_111,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_669 81.92 99.33
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Download FASTA sequences of all ENSEEUG00000004068 retrocopies