Parental gene:

RPS14, ENSEEUG00000010462

Aliases:None
Description:ribosomal protein S14 [Source:HGNC Symbol;Acc:10387]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_6250:7006..11272(-)


>ENSEEUG00000010462
ATGGCACCTCGCAAGGGGAAAGAAAAGAAGGAAGAACAGGTCATCAGCCTTGGACCTCAGGTAGCCGAAGGAGAAAATGT
GTTTGGTGTCTGCCACATCTTTGCATCCTTCAATGATACTTTCGTCCATGTCACTGATCTTTCTGGCAAGGAAACCATTC
GAGTGACTGGTGGGATGAAGGTGAAGGACAGAGATGAATCATCTCCATATGCTGCCATGTTGGCTGCCCAGGATGTCGCC
CAAAGGTGCAAGGAGTTGGGCATCACTGCCCTCCACATCAAACTCCGTGCCACAGGAGGAAATCGGACCAAGACACCTGG
ACCTGGGGCCCAGTCAGCCCTCAGAGCCCTGGCCCGTTCAGGGATGAAAATTGGGCGGATTGAGGATGTCACCCCCATCC
CCTCCGACAGCACTCGCAGGAAGGGAGGTCGCCGTGGTCGCCGTCTGTGA

Library Parental gene expression (RPM)
SRP017611_liver 228 .46 RPM
SRP017611_kidney 368 .33 RPM
SRP017611_brain 165 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004644 ortholog_one2one 2 retrogenes
retro_amel_1390, retro_amel_524,
Bos taurus ENSBTAG00000008570 possible_ortholog 2 retrogenes
retro_btau_1109, retro_btau_213,
Canis familiaris ENSCAFG00000018094 possible_ortholog 2 retrogenes
retro_cfam_1589, retro_cfam_301,
Callithrix jacchus ENSCJAG00000020981 possible_ortholog 1 retrogene
retro_cjac_89,
Cavia porcellus ENSCPOG00000024408 possible_ortholog 2 retrogenes
retro_cpor_253, retro_cpor_284,
Latimeria chalumnae ENSLACG00000016164 possible_ortholog 1 retrogene
retro_lcha_12,
Loxodonta africana ENSLAFG00000031195 possible_ortholog 2 retrogenes
retro_lafr_235, retro_lafr_67,
Myotis lucifugus ENSMLUG00000013279 possible_ortholog 4 retrogenes
retro_mluc_1837, retro_mluc_205, retro_mluc_2464, retro_mluc_2485,
Macaca mulatta ENSMMUG00000002848 possible_ortholog 5 retrogenes
retro_mmul_1921, retro_mmul_1983, retro_mmul_358, retro_mmul_570, retro_mmul_90,
Mustela putorius furo ENSMPUG00000013776 ortholog_one2one 1 retrogene
retro_mputfur_127,
Mus musculus ENSMUSG00000024608 ortholog_one2one 5 retrogenes
retro_mmus_1362, retro_mmus_1924, retro_mmus_2178, retro_mmus_2252, retro_mmus_2380,
Nomascus leucogenys ENSNLEG00000010366 ortholog_one2many 1 retrogene
retro_nleu_101,
Oryctolagus cuniculus ENSOCUG00000011509 possible_ortholog 1 retrogene
retro_ocun_128,
Otolemur garnettii ENSOGAG00000000721 possible_ortholog 1 retrogene
retro_ogar_286,
Rattus norvegicus ENSRNOG00000018774 possible_ortholog 10 retrogenes
retro_rnor_1313, retro_rnor_1467, retro_rnor_1532, retro_rnor_1759, retro_rnor_1875, retro_rnor_1918, retro_rnor_2181, retro_rnor_228, retro_rnor_2728, retro_rnor_873,
Tursiops truncatus ENSTTRG00000013035 ortholog_one2one 1 retrogene
retro_ttru_566,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_330 70.16 82.55
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2. retro_eeur_423 88.14 77.85
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3. retro_eeur_617 88.14 77.85
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Download FASTA sequences of all ENSEEUG00000010462 retrocopies