RetrogeneDB ID: | retro_mmus_1362 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 15:81972389..81972842(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000061848 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps14 | ||
Ensembl ID: | ENSMUSG00000024608 | ||
Aliases: | Rps14, 2600014J02Rik, AL023078 | ||
Description: | ribosomal protein S14 [Source:MGI Symbol;Acc:MGI:98107] |
Percent Identity: | 96.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESS |
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK.TICRVTG.MKVKADRDESS | |
Retrocopy | MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKKTICRVTGRMKVKADRDESS |
Parental | PYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST |
.YAAMLAAQDVAQRCKELGITA.HIKLRATGGNRTKTPGPGAQSALRALA.SGMKIGRIEDVTPIPSDST | |
Retrocopy | LYAAMLAAQDVAQRCKELGITAVHIKLRATGGNRTKTPGPGAQSALRALACSGMKIGRIEDVTPIPSDST |
Parental | RRKGGRRGRRL |
RRKGGRRGRRL | |
Retrocopy | RRKGGRRGRRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 116 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 116 .33 RPM |
SRP007412_heart | 0 .19 RPM | 133 .21 RPM |
SRP007412_kidney | 0 .25 RPM | 171 .55 RPM |
SRP007412_liver | 0 .14 RPM | 111 .72 RPM |
SRP007412_testis | 0 .14 RPM | 156 .43 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_42857 | 259 libraries | 499 libraries | 306 libraries | 6 libraries | 2 libraries |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004644 | 2 retrocopies | |
Bos taurus | ENSBTAG00000008570 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018094 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000020981 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000024408 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000010462 | 3 retrocopies | |
Latimeria chalumnae | ENSLACG00000016164 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000031195 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013279 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000002848 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000013776 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024608 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010366 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011509 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000721 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018774 | 10 retrocopies | |
Tursiops truncatus | ENSTTRG00000013035 | 1 retrocopy |