RetrogeneDB ID: | retro_eeur_330 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_257098:3021..3391(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSEEUG00000010462 | ||
Aliases: | None | ||
Description: | ribosomal protein S14 [Source:HGNC Symbol;Acc:10387] |
Percent Identity: | 70.16 % |
Parental protein coverage: | 82.55 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | VFGVCHIFASFNDTFVHVTDLSGKETIRVTGGMKVKDRD-ESSPYAAMLAAQDVAQRCKELGITALHIKL |
VFGVCHI.ASF.DTF.HVTDLSGKETI....G......D.E.SP..A.LA.QD.AQRC.EL.ITALHI.L | |
Retrocopy | VFGVCHISASFGDTFIHVTDLSGKETI*HITGGMEEKAD>ELSP*TAILATQDAAQRCEELAITALHITL |
Parental | RATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL |
.ATGGNRT.TPGPGAQSALRALARS.MKI..IEDVTP.PSD.T.....RR.R.L | |
Retrocopy | HATGGNRTETPGPGAQSALRALARS*MKIEQIEDVTPTPSDNTGGXXXRRSRHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 165 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 368 .33 RPM |
SRP017611_liver | 0 .00 RPM | 228 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004644 | 2 retrocopies | |
Bos taurus | ENSBTAG00000008570 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018094 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000020981 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000024408 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000010462 | 3 retrocopies |
retro_eeur_330 , retro_eeur_423, retro_eeur_617,
|
Latimeria chalumnae | ENSLACG00000016164 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000031195 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013279 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000002848 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000013776 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024608 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010366 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011509 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000721 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018774 | 10 retrocopies | |
Tursiops truncatus | ENSTTRG00000013035 | 1 retrocopy |