Parental gene: | IDI1, ENSEEUG00000012555 |
| Aliases: | None |
| Description: | isopentenyl-diphosphate delta isomerase 1 [Source:HGNC Symbol;Acc:5387] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | scaffold_271598:1653..9318(+) |
>ENSEEUG00000012555
TATCAAGGGCAGACCAGACATAAGGGGACAATGCCTGAAATAAATATGGAGAAGCTGGATAATCAGCAGGTGCAACTCCT
GGCAGAGATGTGCATACTCATTGATGAAAATGACAATAACATTGGGGCTGACACCAAAAAGAACTGTCACCTGAATGAGA
ACATTGAGAAAGGATTATTGCATCGAGCATTCAGTGTCTTCTTATTTAATACTGAAAATAAGCTCTTGTTACAACAGAGA
TCAGATGCTAAAATTACCTTTCCAGGTTGTTTTACCAATACTTGTTGTAGTCACCCACTAAACAATCCAGGAGAGCTTGA
AGAAAATGATGCGATTGGAGTGAGAAGAGCAGCTCAGAGACGTTTGAAAGCTGAGTTAGGCATTCCCCTGGAAGAGGTTC
CTCCAGAAGAAATTCAGTACCTAACACGATTGTATTACAAGGCTCAATCTGATGACATTTGGGGAGAACATGAGATTGAT
TACATTTTGTTTATGAAGAAGAATGTAACTTTGAATCCAGACCCCAATGAGATTAAAAGCTATTGTTATGTGTCAAAGGA
AGAAGTAAAGGAACTTTTGAGAAAGGCAGCCACTGGCAAAATTAAGTTAACTCCATGGTTCAAGATTATTACAGAGACTT
TTCTCTTTAAATGGTGGGACAATTTACATAATTTGGATGTGTTTATTGACCATGAGAAAATACATAGAATGTGA
TATCAAGGGCAGACCAGACATAAGGGGACAATGCCTGAAATAAATATGGAGAAGCTGGATAATCAGCAGGTGCAACTCCT
GGCAGAGATGTGCATACTCATTGATGAAAATGACAATAACATTGGGGCTGACACCAAAAAGAACTGTCACCTGAATGAGA
ACATTGAGAAAGGATTATTGCATCGAGCATTCAGTGTCTTCTTATTTAATACTGAAAATAAGCTCTTGTTACAACAGAGA
TCAGATGCTAAAATTACCTTTCCAGGTTGTTTTACCAATACTTGTTGTAGTCACCCACTAAACAATCCAGGAGAGCTTGA
AGAAAATGATGCGATTGGAGTGAGAAGAGCAGCTCAGAGACGTTTGAAAGCTGAGTTAGGCATTCCCCTGGAAGAGGTTC
CTCCAGAAGAAATTCAGTACCTAACACGATTGTATTACAAGGCTCAATCTGATGACATTTGGGGAGAACATGAGATTGAT
TACATTTTGTTTATGAAGAAGAATGTAACTTTGAATCCAGACCCCAATGAGATTAAAAGCTATTGTTATGTGTCAAAGGA
AGAAGTAAAGGAACTTTTGAGAAAGGCAGCCACTGGCAAAATTAAGTTAACTCCATGGTTCAAGATTATTACAGAGACTT
TTCTCTTTAAATGGTGGGACAATTTACATAATTTGGATGTGTTTATTGACCATGAGAAAATACATAGAATGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 27 .33 RPM |
| SRP017611_kidney | 12 .19 RPM |
| SRP017611_brain | 25 .14 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000008483 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000067064 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000934 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000017115 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000005998 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000058258 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013594 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007493 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000008692 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000002039 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000002239 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000023260 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011174 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_61 | 97.05 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_188 | 80.25 | 65.40 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_eeur_198 | 86.06 | 69.20 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000012555 retrocopies