Parental gene: | IDI1, ENSPTRG00000002239 |
| Aliases: | None |
| Description: | isopentenyl-diphosphate delta isomerase 1 [Source:HGNC Symbol;Acc:5387] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 10:1124915..1135315(-) |
>ENSPTRG00000002239
ATGTGGCGTGGACTGGCGCTGGCGAGAGCGATTGGCTGCGCGGCCCGGGGGTGGGGCCAGTGGGCGGTGCGCGCCGCGGA
CTGTGCTCAAAGCGGGCGCTCTCCGGGACCGGCGGGTGTCTGTGGCCGGAGGCTGATCAGTGTTCTAGAACAGATCAGAC
ATTTTGTAATGATGCCTGAAATAAACACTAACCACCTCGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGTATCCTT
ATTGATGAAAATGACAATAAAATTGGAGCTGAGACCAAGAAGAACTGTCACCTGAACGAGAACATTGAGAAAGGATTATT
GCATCGAGCTTTTAGCGTCTTCTTATTCAACACCGAAAATAAGCTTCTGCTACAGCAAAGATCAGATGCTAAGATTACCT
TTCCAGGTTGTTTTACGAATACGTGTTGTAGTCATCCATTAAGCAATCCAGCCGAGCTTGAGGAAAGTGACGCCCTTGGA
GTGAGGCGAGCAGCACAGAGACGGCTGAAAGCTGAGCTAGGAATTCCCTTGGAAGAGGTTCCTCCAGAAGAAATTAATTA
TTTAACACGAATTCACTACAAAGCTCAGTCTGATGGTATCTGGGGTGAACATGAAATTGATTACATTTTGTTGGTGAGGA
AGAATGTAACTTTGAATCCAGATCCCAATGAGATTAAAAGCTATTGTTATGTGTCAAAGGAAGAACTAAAAGAACTTCTG
AAAAAAGCAGCCAGTGGTGAAATTAAGATAACGCCATGGTTTAAAATTATTGCAGCGACTTTTCTCTTTAAATGGTGGGA
TAACTTAAATCATTTGAATCAGTTTGTTGACCATGAGAAAATATACAGAATG
ATGTGGCGTGGACTGGCGCTGGCGAGAGCGATTGGCTGCGCGGCCCGGGGGTGGGGCCAGTGGGCGGTGCGCGCCGCGGA
CTGTGCTCAAAGCGGGCGCTCTCCGGGACCGGCGGGTGTCTGTGGCCGGAGGCTGATCAGTGTTCTAGAACAGATCAGAC
ATTTTGTAATGATGCCTGAAATAAACACTAACCACCTCGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGTATCCTT
ATTGATGAAAATGACAATAAAATTGGAGCTGAGACCAAGAAGAACTGTCACCTGAACGAGAACATTGAGAAAGGATTATT
GCATCGAGCTTTTAGCGTCTTCTTATTCAACACCGAAAATAAGCTTCTGCTACAGCAAAGATCAGATGCTAAGATTACCT
TTCCAGGTTGTTTTACGAATACGTGTTGTAGTCATCCATTAAGCAATCCAGCCGAGCTTGAGGAAAGTGACGCCCTTGGA
GTGAGGCGAGCAGCACAGAGACGGCTGAAAGCTGAGCTAGGAATTCCCTTGGAAGAGGTTCCTCCAGAAGAAATTAATTA
TTTAACACGAATTCACTACAAAGCTCAGTCTGATGGTATCTGGGGTGAACATGAAATTGATTACATTTTGTTGGTGAGGA
AGAATGTAACTTTGAATCCAGATCCCAATGAGATTAAAAGCTATTGTTATGTGTCAAAGGAAGAACTAAAAGAACTTCTG
AAAAAAGCAGCCAGTGGTGAAATTAAGATAACGCCATGGTTTAAAATTATTGCAGCGACTTTTCTCTTTAAATGGTGGGA
TAACTTAAATCATTTGAATCAGTTTGTTGACCATGAGAAAATATACAGAATG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 13 .80 RPM |
| SRP007412_cerebellum | 13 .80 RPM |
| SRP007412_heart | 7 .61 RPM |
| SRP007412_kidney | 7 .56 RPM |
| SRP007412_liver | 8 .71 RPM |
| SRP007412_testis | 12 .44 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000008483 | ortholog_one2one | 3 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000012555 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000067064 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000934 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000017115 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000005998 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000058258 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013594 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007493 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000008692 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000002039 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000023260 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011174 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1412 | 68.37 | 74.30 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1647 | 89.25 | 65.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2747 | 69.70 | 91.55 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000002239 retrocopies