Parental gene: | IDI1, ENSPPYG00000002039 |
| Aliases: | None |
| Description: | isopentenyl-diphosphate Delta-isomerase 1 [Source:RefSeq peptide;Acc:NP_001126068] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 10:1068199..1076619(-) |
>ENSPPYG00000002039
ATGTGGCGCGGACTGGCGCTTGCGCAGGCGATTGGCTGCGCGGCCCGGGGGCGGGGCCAGTGGGCGGTGCGCGCCGCGGA
CAGTGCTCAAAGCGGACGCGCTCCGGGACCGGCCGGTGTCCGTGGCCGGAGGCTGATCAGTGTTCTAGGACAGATAAGAC
ATTTTGTAATGATGCCTGAAATAAACACTGACCACCTCGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGTATCCTT
ATTGATGAAAATGACAATAAAATTGGGGCTGAGACCAAGAAGAATTGTCACCTGAATGAGAACATTGAGAAAGGATTATT
GCATCGAGCTTTTAGTGTCTTCTTATTCAACACCGAAAATAAGCTTCTGCTACAGCAAAGATCAGATGCTAAGATTACCT
TTCCAGGTTGTTTTACTAATACTTGTTGTAGTCATCCATTAAGTAATCCAGGTGAGCTTGAGGAAAATGACGCCCTTGGA
GTGAGGCGAGCGGCACAGAGGCGGCTGAAAGCTGAGCTAGGAATTCCCTTGGAAGAGGTTCCTCCAGAAGAAATTAATTA
TTTAACACGAATTCACTACAAAGCTCAGTCTGATGGTATCTGGGGTGAACATGAAATTGATTACATTTTGTTGGTGAGGA
AGAATGTAACTTTGAATCCAGATCCCAATGAGATTAAAAGCTATTGTTATGTGTCAAAGGAAGAACTAAAAGAACTTCTG
AAAAAAGCAGCCAGTGGTGAAATTAAGATAACGCCATGGTTTAAAATTATTGCAGAGACTTTTCTCTTTAAATGGTGGGA
TAACTTAAATCATTTGAATCAGTTTGTTGACCATGAGAAAATATACAGAATCTGA
ATGTGGCGCGGACTGGCGCTTGCGCAGGCGATTGGCTGCGCGGCCCGGGGGCGGGGCCAGTGGGCGGTGCGCGCCGCGGA
CAGTGCTCAAAGCGGACGCGCTCCGGGACCGGCCGGTGTCCGTGGCCGGAGGCTGATCAGTGTTCTAGGACAGATAAGAC
ATTTTGTAATGATGCCTGAAATAAACACTGACCACCTCGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGTATCCTT
ATTGATGAAAATGACAATAAAATTGGGGCTGAGACCAAGAAGAATTGTCACCTGAATGAGAACATTGAGAAAGGATTATT
GCATCGAGCTTTTAGTGTCTTCTTATTCAACACCGAAAATAAGCTTCTGCTACAGCAAAGATCAGATGCTAAGATTACCT
TTCCAGGTTGTTTTACTAATACTTGTTGTAGTCATCCATTAAGTAATCCAGGTGAGCTTGAGGAAAATGACGCCCTTGGA
GTGAGGCGAGCGGCACAGAGGCGGCTGAAAGCTGAGCTAGGAATTCCCTTGGAAGAGGTTCCTCCAGAAGAAATTAATTA
TTTAACACGAATTCACTACAAAGCTCAGTCTGATGGTATCTGGGGTGAACATGAAATTGATTACATTTTGTTGGTGAGGA
AGAATGTAACTTTGAATCCAGATCCCAATGAGATTAAAAGCTATTGTTATGTGTCAAAGGAAGAACTAAAAGAACTTCTG
AAAAAAGCAGCCAGTGGTGAAATTAAGATAACGCCATGGTTTAAAATTATTGCAGAGACTTTTCTCTTTAAATGGTGGGA
TAACTTAAATCATTTGAATCAGTTTGTTGACCATGAGAAAATATACAGAATCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 25 .38 RPM |
| SRP007412_cerebellum | 17 .88 RPM |
| SRP007412_heart | 9 .39 RPM |
| SRP007412_kidney | 10 .81 RPM |
| SRP007412_liver | 27 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000008483 | ortholog_one2one | 3 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000012555 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000067064 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000934 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000017115 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000005998 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000058258 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013594 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007493 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000008692 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000002239 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000023260 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011174 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1783 | 70.75 | 73.59 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_3327 | 71.59 | 91.55 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000002039 retrocopies