Parental gene:

RNF4, ENSFCAG00000004051

Aliases:None
Description:ring finger protein 4 [Source:HGNC Symbol;Acc:10067]
Organism:Cat (Felis catus)
Coordinates:B1:200280893..200293879(+)


>ENSFCAG00000004051
AGAAAGCGTCGTGGTGGGACAGTAAATTCTAGACAAGCCCAGAAGCGAACTCGGGAAGCAGCGTCCACCCCTGAGATGGC
CTTGGAAGCGGAGCCCATAGAACTTGTGGAAAGCGCTGGAGACGAAATAGTGGACCTGACCTGTGAATCTTTAGAGCCTG
TGGTTGTTGACCTGACTCACAATGACTCTGTCGTGGTAAGTGTTGAAAGGAGGCGGCCGAGGAGGAATGCCAGGCGGCCG
CGCCAGGACCATGCCGACAGCTGTGTGGTGAGCAGTGATGACGAGGAGGTGTCCAGGGACAGAGATGTGTACGTGACCAC
CCACACTCCTAGACACGCCAGAGAGGAGGCAGCCGCAGGACTCAGGCCTTCTGGTACTGTCAGCTGTCCGATCTGCATGG
ACGGGTACTCTGAGATTGTACAGAACGGACGTCTCATCGTTTCTACAGAATGCGGCCACGTCTTTTGTAGCCAGTGCCTC
CGTGACTCCCTTAAGAATGCTAACACTTGCCCAACTTGCAGGAAAAAGATCAACCACAAACGATACCACCCCATTTATAT
A

Library Parental gene expression (RPM)
SRP017611_liver 3 .84 RPM
SRP017611_kidney 7 .83 RPM
SRP017611_brain 11 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014366 ortholog_one2one 1 retrogene
retro_amel_77,
Canis familiaris ENSCAFG00000014856 ortholog_one2one 1 retrogene
retro_cfam_25,
Dipodomys ordii ENSDORG00000006675 ortholog_one2one 2 retrogenes
retro_dord_347, retro_dord_411,
Equus caballus ENSECAG00000024877 ortholog_one2one 1 retrogene
retro_ecab_33,
Echinops telfairi ENSETEG00000001683 ortholog_one2one 3 retrogenes
retro_etel_469, retro_etel_626, retro_etel_627,
Loxodonta africana ENSLAFG00000007382 ortholog_one2one 1 retrogene
retro_lafr_44,
Myotis lucifugus ENSMLUG00000005969 ortholog_one2one 1 retrogene
retro_mluc_1640,
Nomascus leucogenys ENSNLEG00000000160 possible_ortholog 2 retrogenes
retro_nleu_1713, retro_nleu_37,
Oryctolagus cuniculus ENSOCUG00000004998 possible_ortholog 2 retrogenes
retro_ocun_1566, retro_ocun_162,
Ochotona princeps ENSOPRG00000004317 ortholog_one2one 3 retrogenes
retro_opri_112, retro_opri_783, retro_opri_863,
Procavia capensis ENSPCAG00000004528 ortholog_one2one 1 retrogene
retro_pcap_208,
Pongo abelii ENSPPYG00000025865 possible_ortholog 2 retrogenes
retro_pabe_1240, retro_pabe_36,
Sus scrofa ENSSSCG00000008690 ortholog_one2one 1 retrogene
retro_sscr_181,
Ictidomys tridecemlineatus ENSSTOG00000011101 possible_ortholog 2 retrogenes
retro_itri_1108, retro_itri_171,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_897 57.69 96.26
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Download FASTA sequences of all ENSFCAG00000004051 retrocopies