RetrogeneDB ID: | retro_etel_469 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_7777:225088..225613(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF4 | ||
Ensembl ID: | ENSETEG00000001683 | ||
Aliases: | None | ||
Description: | ring finger protein 4 [Source:HGNC Symbol;Acc:10067] |
Percent Identity: | 53.41 % |
Parental protein coverage: | 94.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QTQKRSRDARSAPEMAVEAEPIELVESAGDEIVDLTCESLEPVVVDLTHNDSVVVSGKRRRPRRTARRLR |
QT.K........PEM..E.E.IEL.ES.G.E.VDLTCE.LEP.V.DLTHNDS.V....RRRPRR.....R | |
Retrocopy | QTPKPAGERDPTPEMVLETELIELTESDGEEVVDLTCEPLEPAVIDLTHNDSAVITRARRRPRRNTKP-R |
Parental | QDHADSCVVSSDDDDLPRDRDVYVTPPTPRNTREEGTTGLRSSGTVSCPICMDGYSEIVQNGRLIVSTEC |
...A..C.VS.D......DRDVYV......N...E.T......G...C.ICMDGYSEI.Q..R.I.STEC | |
Retrocopy | EGQAGDCMVSCDEEGQIQDRDVYVINGAHHNALGEETSSCPPPGSIWCRICMDGYSEIEQSRRRIYSTEC |
Parental | GHVFCSQCLRDSLKTSSTCPTCRKKISHKRYHPIYI |
GH.FCSQCL..SLK...TCP.C.K.I....YH.IYI | |
Retrocopy | GHIFCSQCLCSSLKYTKTCPVCWKIIRGHQYHRIYI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014366 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014856 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000006675 | 2 retrocopies | |
Equus caballus | ENSECAG00000024877 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001683 | 3 retrocopies |
retro_etel_469 , retro_etel_626, retro_etel_627,
|
Felis catus | ENSFCAG00000004051 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000007382 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005969 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000160 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004998 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000004317 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000004528 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025865 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000008690 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011101 | 2 retrocopies |