RetrogeneDB ID: | retro_etel_626 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_104518:7906..8213(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF4 | ||
Ensembl ID: | ENSETEG00000001683 | ||
Aliases: | None | ||
Description: | ring finger protein 4 [Source:HGNC Symbol;Acc:10067] |
Percent Identity: | 58.49 % |
Parental protein coverage: | 55.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DSVVVSGKRRRP-RRTARRLRQDHADSCVVSSDDDDLPRDRDVYVTPPTPRNTREEGTTGLRSSGTVSCP |
DSV.....RR.P.RRT...L.QDHA............P...DV.VT.PTP.N.REE.TTGL.SSGTV.CP | |
Retrocopy | DSVLIVEERRWP<RRTVPGLCQDHATAVS*AATMMTCP-ETDVPVTRPTPMNAREEVTTGLGSSGTVCCP |
Parental | ICMDGYSEIVQNGR-LIVSTECGHVFCSQCLRDSLK |
I..D.YSE.VQNG....VSTECGHVFC.QC..DSLK | |
Retrocopy | IFRDRYSEVVQNGP<SLVSTECGHVFCIQCP*DSLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014366 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014856 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000006675 | 2 retrocopies | |
Equus caballus | ENSECAG00000024877 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001683 | 3 retrocopies |
retro_etel_469, retro_etel_626 , retro_etel_627,
|
Felis catus | ENSFCAG00000004051 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000007382 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005969 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000160 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004998 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000004317 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000004528 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025865 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000008690 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011101 | 2 retrocopies |