Parental gene:

JTB, ENSFCAG00000012590

Aliases:None
Description:jumping translocation breakpoint [Source:HGNC Symbol;Acc:6201]
Organism:Cat (Felis catus)
Coordinates:F1:68226322..68228054(+)


>ENSFCAG00000012590
ATGCCTACAGGCGCAGGGAGGCGTAGCCTCCCCCAGGGCAGCCACCTGTGCTGGTTGCTCTGCGCTTTCACCTTGAAGCT
CTGCCAAGCCGAGGCTCCGGTGCGGGCGGAGAAGCTGTCAGTGAGCACCTCAAATTTGCCGTGCTGGCTGGTGGAAGAGT
TTGTGGTGGCAGAAGAATGTGCTCCGTGCTCTAATTTCCAGGCTAAGACCACTCCTGAGTGTGGTTCCACAGGGTACGTG
GAGAAAATCACATGCAGCTCATCCAAGAGAAATGAGTTGAAAAGCTGCCGCTCAGCTCTGATGGAGCAGCACTTATTCTG
GAAATTTGAAGGGGCTGTCGTGGGTGTGGCCTTGGTCTTCGCTTGCCTTGTCATCGTTCGTCAGCGACAGCTGGACAGAA
AAGCTCTGGAAAAGGTCCGGAAGCAAATCGAGTCCATATAG

Library Parental gene expression (RPM)
SRP017611_liver 24 .77 RPM
SRP017611_kidney 38 .13 RPM
SRP017611_brain 37 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002520 ortholog_one2one 1 retrogene
retro_chof_1297,
Callithrix jacchus ENSCJAG00000009973 ortholog_one2one 1 retrogene
retro_cjac_496,
Dasypus novemcinctus ENSDNOG00000000740 ortholog_one2many 1 retrogene
retro_dnov_1095,
Echinops telfairi ENSETEG00000008256 ortholog_one2one 1 retrogene
retro_etel_1340,
Myotis lucifugus ENSMLUG00000013299 ortholog_one2one 1 retrogene
retro_mluc_2225,
Oryctolagus cuniculus ENSOCUG00000011788 ortholog_one2one 1 retrogene
retro_ocun_470,
Procavia capensis ENSPCAG00000003210 ortholog_one2one 1 retrogene
retro_pcap_301,
Pongo abelii ENSPPYG00000000791 ortholog_one2one 1 retrogene
retro_pabe_1886,
Sus scrofa ENSSSCG00000006559 ortholog_one2one 1 retrogene
retro_sscr_687,
Tupaia belangeri ENSTBEG00000012646 ortholog_one2one 1 retrogene
retro_tbel_762,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1025 76.42 71.23
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2. retro_fcat_1838 60.00 76.71
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Download FASTA sequences of all ENSFCAG00000012590 retrocopies