Parental gene:

LSM5, ENSG00000106355

Aliases:LSM5, YER146W
Description:LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162]
Organism:Human (Homo sapiens)
Coordinates:7:32524950..32534895(-)


>ENSG00000106355
ATGGCGGCTAACGCTACTACCAACCCGTCGCAGCTGCTGCCCTTAGAGCTTGTGGACAAATGTATAGGATCAAGAATTCA
CATCGTGATGAAGAGTGATAAGGAAATTGTTGGTACTCTTCTAGGATTTGATGACTTTGTCAATATGGTACTGGAAGATG
TCACTGAGTTTGAAATCACACCAGAAGGAAGAAGGATTACTAAATTAGATCAGATTTTGCTAAATGGAAATAATATAACA
ATGCTGGTTCCTGGAGGAGAAGGACCTGAAGTGTGA

Library Parental gene expression (RPM)
bodymap2_liver 18 .17 RPM
bodymap2_lung 14 .28 RPM
bodymap2_breast 22 .96 RPM
bodymap2_adipose 14 .07 RPM
bodymap2_adrenal 30 .58 RPM
bodymap2_skeletal_muscle 10 .77 RPM
bodymap2_thyroid 32 .88 RPM
bodymap2_prostate 25 .32 RPM
bodymap2_colon 25 .00 RPM
bodymap2_testis 25 .77 RPM
bodymap2_brain 21 .21 RPM
bodymap2_heart 19 .24 RPM
bodymap2_white_blood_cells 22 .44 RPM
bodymap2_lymph_node 24 .56 RPM
bodymap2_ovary 24 .79 RPM
bodymap2_kidney 24 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009185 possible_ortholog 3 retrogenes
retro_cjac_1883, retro_cjac_2760, retro_cjac_3068,
Echinops telfairi ENSETEG00000018068 possible_ortholog 8 retrogenes
retro_etel_1305, retro_etel_1502, retro_etel_1907, retro_etel_198, retro_etel_2054, retro_etel_2193, retro_etel_454, retro_etel_964,
Gorilla gorilla ENSGGOG00000010325 ortholog_one2one 2 retrogenes
retro_ggor_2504, retro_ggor_2824,
Microcebus murinus ENSMICG00000005353 ortholog_one2one 3 retrogenes
retro_mmur_1345, retro_mmur_69, retro_mmur_950,
Myotis lucifugus ENSMLUG00000017028 ortholog_one2one 1 retrogene
retro_mluc_2439,
Oryctolagus cuniculus ENSOCUG00000029043 ortholog_one2one 5 retrogenes
retro_ocun_1284, retro_ocun_1452, retro_ocun_1513, retro_ocun_1556, retro_ocun_903,
Ochotona princeps ENSOPRG00000002443 ortholog_one2one 3 retrogenes
retro_opri_26, retro_opri_562, retro_opri_701,
Pongo abelii ENSPPYG00000017661 possible_ortholog 1 retrogene
retro_pabe_3449,
Rattus norvegicus ENSRNOG00000042126 possible_ortholog 3 retrogenes
retro_rnor_1171, retro_rnor_567, retro_rnor_694,
Sus scrofa ENSSSCG00000026064 ortholog_one2one 1 retrogene
retro_sscr_385,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3703 72.31 70.33
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2. retro_hsap_4216 78.79 70.33
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Download FASTA sequences of all ENSG00000106355 retrocopies