RetrogeneDB ID: | retro_rnor_694 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:57437536..57437782(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Lsm5 | ||
Ensembl ID: | ENSRNOG00000042126 | ||
Aliases: | None | ||
Description: | U6 snRNA-associated Sm-like protein LSm5 [Source:RefSeq peptide;Acc:NP_001100759] |
Percent Identity: | 55.17 % |
Parental protein coverage: | 92.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | NATTN-PSQLLPLELVDKCIG-SRIHIVMK-SDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLD |
N..TN.P..LL.L.L.DK....SRIHIVM...DKEIVG.LLGFD.FV....ED.T....T......TKL. | |
Retrocopy | NTSTN<PVDLLTLDLMDKVED<SRIHIVMG<CDKEIVGILLGFDGFVPVMVEDATD*SYT-GSKKDTKLA |
Parental | QILLNGNNITMLVPGGE |
..LLNG.N.TML..GGE | |
Retrocopy | LKLLNGKNVTMLIFGGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .28 RPM |
SRP017611_liver | 0 .00 RPM | 2 .62 RPM |