RetrogeneDB ID: | retro_rnor_1171 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 16:2037227..2037497(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Lsm5 | ||
Ensembl ID: | ENSRNOG00000042126 | ||
Aliases: | None | ||
Description: | U6 snRNA-associated Sm-like protein LSm5 [Source:RefSeq peptide;Acc:NP_001100759] |
Percent Identity: | 93.41 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLD |
MA.NATTN.SQLLPLELV.KCIGSRIHIVMKSDK.IVGT.LGFDDFVNMVLEDVTEFEITPEGRRITKLD | |
Retrocopy | MAVNATTNRSQLLPLELVAKCIGSRIHIVMKSDKDIVGTPLGFDDFVNMVLEDVTEFEITPEGRRITKLD |
Parental | QILLNGNNITMLVPGGEGPEV |
QILLNGNNITMLVPG.EGPEV | |
Retrocopy | QILLNGNNITMLVPG-EGPEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .28 RPM |
SRP017611_liver | 0 .00 RPM | 2 .62 RPM |