Parental gene: | LSM5, ENSOCUG00000029043 |
| Aliases: | None |
| Description: | LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 10:16617989..16621004(-) |
>ENSOCUG00000029043
ATGGCGGCTAACGCTACTACGAACCCCTCGCAGCTGCTGCCGCTAGAGCTTGTGGATAAATGTATAGGATCCAGAATTCA
CATTGTGATGAAGAGTGATAAGGAAATTGTTGGCACCCTTCTTGGCTTCGATGACTTCGTCAATATGGTATTGGAAGATG
TCACTGAATTTGAAATCACACCGGAAGGAAGAAGGATCACTAAATTAGATCAGATTTTGCTAAATGGAAATAATATAACA
ATGTTGGTCCCGGGAGGAGAAGGGCCTGAAGTA
ATGGCGGCTAACGCTACTACGAACCCCTCGCAGCTGCTGCCGCTAGAGCTTGTGGATAAATGTATAGGATCCAGAATTCA
CATTGTGATGAAGAGTGATAAGGAAATTGTTGGCACCCTTCTTGGCTTCGATGACTTCGTCAATATGGTATTGGAAGATG
TCACTGAATTTGAAATCACACCGGAAGGAAGAAGGATCACTAAATTAGATCAGATTTTGCTAAATGGAAATAATATAACA
ATGTTGGTCCCGGGAGGAGAAGGGCCTGAAGTA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 1 .16 RPM |
| SRP017611_kidney | 7 .30 RPM |
| SRP017611_brain | 5 .79 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000009185 | possible_ortholog | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000018068 | possible_ortholog | 8 retrogenes | |
| Homo sapiens | ENSG00000106355 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010325 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000005353 | ortholog_one2one | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017028 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000002443 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000017661 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000042126 | possible_ortholog | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000026064 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_903 | 82.80 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1284 | 59.78 | 98.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1452 | 79.57 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_1513 | 86.44 | 64.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_1556 | 69.84 | 67.03 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000029043 retrocopies