Parental gene: | CHCHD3, ENSG00000106554 |
| Aliases: | CHCHD3, MINOS3, PPP1R22 |
| Description: | coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:HGNC Symbol;Acc:21906] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 7:132469628..132766848(-) |
>ENSG00000106554
ATGGGTGGGACCACCAGCACCCGCCGGGTCACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCG
GCTTTCGGAAAATGTGATTGATCGAATGAAGGAATCCTCTCCATCTGGTTCGAAGTCTCAGCGGTATTCTGGTGCTTATG
GTGCCTCAGTTTCTGATGAAGAATTGAAAAGAAGAGTAGCTGAGGAGCTGGCATTGGAGCAAGCCAAGAAAGAATCCGAA
GATCAGAAACGACTAAAGCAAGCCAAAGAGCTGGACCGAGAGAGGGCTGCTGCCAATGAGCAGTTAACCAGAGCCATCCT
TCGGGAGAGGATATGTAGCGAGGAGGAACGCGCTAAGGCAAAGCACCTGGCTAGGCAGCTGGAAGAGAAAGACCGAGTGC
TAAAGAAGCAGGATGCATTCTACAAAGAACAGCTGGCTAGACTGGAGGAGAGGAGCTCAGAGTTCTACAGAGTCACCACT
GAACAATATCAGAAAGCTGCTGAAGAGGTGGAAGCAAAGTTCAAGCGATATGAGTCTCATCCAGTCTGTGCTGATCTGCA
GGCCAAAATTCTTCAGTGTTACCGTGAGAACACCCACCAGACCCTCAAATGCTCCGCTCTGGCCACCCAGTATATGCACT
GTGTCAATCATGCCAAACAGAGCATGCTTGAGAAGGGAGGATAA
ATGGGTGGGACCACCAGCACCCGCCGGGTCACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCG
GCTTTCGGAAAATGTGATTGATCGAATGAAGGAATCCTCTCCATCTGGTTCGAAGTCTCAGCGGTATTCTGGTGCTTATG
GTGCCTCAGTTTCTGATGAAGAATTGAAAAGAAGAGTAGCTGAGGAGCTGGCATTGGAGCAAGCCAAGAAAGAATCCGAA
GATCAGAAACGACTAAAGCAAGCCAAAGAGCTGGACCGAGAGAGGGCTGCTGCCAATGAGCAGTTAACCAGAGCCATCCT
TCGGGAGAGGATATGTAGCGAGGAGGAACGCGCTAAGGCAAAGCACCTGGCTAGGCAGCTGGAAGAGAAAGACCGAGTGC
TAAAGAAGCAGGATGCATTCTACAAAGAACAGCTGGCTAGACTGGAGGAGAGGAGCTCAGAGTTCTACAGAGTCACCACT
GAACAATATCAGAAAGCTGCTGAAGAGGTGGAAGCAAAGTTCAAGCGATATGAGTCTCATCCAGTCTGTGCTGATCTGCA
GGCCAAAATTCTTCAGTGTTACCGTGAGAACACCCACCAGACCCTCAAATGCTCCGCTCTGGCCACCCAGTATATGCACT
GTGTCAATCATGCCAAACAGAGCATGCTTGAGAAGGGAGGATAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 18 .72 RPM |
| bodymap2_lung | 23 .63 RPM |
| bodymap2_breast | 70 .97 RPM |
| bodymap2_adipose | 45 .60 RPM |
| bodymap2_adrenal | 35 .78 RPM |
| bodymap2_skeletal_muscle | 98 .63 RPM |
| bodymap2_thyroid | 74 .89 RPM |
| bodymap2_prostate | 42 .75 RPM |
| bodymap2_colon | 50 .04 RPM |
| bodymap2_testis | 46 .98 RPM |
| bodymap2_brain | 21 .71 RPM |
| bodymap2_heart | 115 .31 RPM |
| bodymap2_white_blood_cells | 26 .13 RPM |
| bodymap2_lymph_node | 25 .99 RPM |
| bodymap2_ovary | 45 .61 RPM |
| bodymap2_kidney | 53 .65 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000001312 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000004942 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000001671 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000053768 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012967 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000014032 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025827 | ortholog_one2one | 5 retrogenes | |
| Pan troglodytes | ENSPTRG00000019711 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013211 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000012111 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000022282 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_358 | 94.39 | 93.83 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_542 | 79.82 | 98.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_3759 | 61.72 | 55.07 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000106554 retrocopies