RetrogeneDB ID: | retro_hsap_542 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:8661895..8662573(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000236420 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHCHD3 | ||
Ensembl ID: | ENSG00000106554 | ||
Aliases: | CHCHD3, MINOS3, PPP1R22 | ||
Description: | coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:HGNC Symbol;Acc:21906] |
Percent Identity: | 79.82 % |
Parental protein coverage: | 98.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GGTTSTRRVTFEA--DEN-ENITVVKGIRLSENVIDRMKESSPSGSKSQRYSGAYGASVSDEELKRRVAE |
GGT.ST.RVTFE....EN...ITVVKGI.LSENVID.MKESSPSGSKSQ.YSGAY.A.VSDEELKRRVAE | |
Retrocopy | GGTLSTHRVTFEVDKNEN>SPITVVKGIELSENVID*MKESSPSGSKSQWYSGAYDALVSDEELKRRVAE |
Parental | ELALEQAKKESEDQKRLKQAKELDRERAAANEQLTRAILRERICSEEERAKAKHLARQLEEKDRVLKKQD |
EL.LEQAKK..EDQKRLKQA.EL.RERAAAN.QLTRAI.RER..S.EE..KA.HLAR.LEEK.RVLKKQ. | |
Retrocopy | ELTLEQAKKQTEDQKRLKQATELERERAAANGQLTRAIPRERVSSQEEGTKAMHLARRLEEKGRVLKKQV |
Parental | AFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKFK-RYESHPVCADLQAKILQCYRENTHQTLKCSAL |
AF.K..LARLEERSSEFY.VTTEQYQK.AE.VEA.FK..YESHPV.ADLQAKILQCY.ENTHQT.KCS.L | |
Retrocopy | AFCKVELARLEERSSEFYKVTTEQYQKIAEDVEARFK<VYESHPVYADLQAKILQCYYENTHQTFKCSTL |
Parental | ATQYMHCVNHAKQSMLEK |
A..YMH.VNHAKQSMLEK | |
Retrocopy | ASRYMHYVNHAKQSMLEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 45 .60 RPM |
bodymap2_adrenal | 0 .00 RPM | 35 .78 RPM |
bodymap2_brain | 0 .00 RPM | 21 .71 RPM |
bodymap2_breast | 0 .00 RPM | 70 .97 RPM |
bodymap2_colon | 0 .00 RPM | 50 .04 RPM |
bodymap2_heart | 0 .00 RPM | 115 .31 RPM |
bodymap2_kidney | 0 .00 RPM | 53 .65 RPM |
bodymap2_liver | 0 .00 RPM | 18 .72 RPM |
bodymap2_lung | 0 .00 RPM | 23 .63 RPM |
bodymap2_lymph_node | 0 .00 RPM | 25 .99 RPM |
bodymap2_ovary | 0 .00 RPM | 45 .61 RPM |
bodymap2_prostate | 0 .00 RPM | 42 .75 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 98 .63 RPM |
bodymap2_testis | 0 .00 RPM | 46 .98 RPM |
bodymap2_thyroid | 0 .00 RPM | 74 .89 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 26 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_407 |
Pongo abelii | retro_pabe_501 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001312 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004942 | 1 retrocopy | |
Homo sapiens | ENSG00000106554 | 3 retrocopies |
retro_hsap_358, retro_hsap_3759, retro_hsap_542 ,
|
Macaca mulatta | ENSMMUG00000001671 | 1 retrocopy | |
Mus musculus | ENSMUSG00000053768 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012967 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014032 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025827 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000019711 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000013211 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012111 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022282 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |