RetrogeneDB ID:

retro_nleu_168

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397261.1:20447372..20447742(+)
Located in intron of:ENSNLEG00000015122
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CHCHD3
Ensembl ID:ENSNLEG00000012967
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_168
AGCAAAGAACTGGACTAAGTGAGGGCTACTGCCAATGAGCAGTTAACTAGAGCTTTTCTATGGGAGAGAATATCAAGTAA
GGAGGAACATTCTAAGACAAAGCACCTGGCTAAGAAGCTGGAAAAGACAGATGGAGTGATAAAGAAACAGGATGCATTTT
GCAAAGAGCAGCTGGCTAGACTACAGGAAAGGAACTCAGAGTTCTGCAAGGTCACCACTCAACATAATTAGAAAGCTGCT
GAAGAGGTGGCAGGAAAGTTCAAGTGCGTAAGTCTCATCCAGTCTGTACTGATCCATATGCCACAATTCTCCAGTATTAT
CACCAGAACACCCCAAAACTCTCAGCTGCTCTGCTCTGGCCAACCAGTAT

ORF - retro_nleu_168 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.87 %
Parental protein coverage: 54.63 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalAKELDRERAAANEQLTRAILRERISSEEERAKAKHLARQLEEKDRVLKKQDAFYKEQLARLEERSSEFYR
.KELD..RA.ANEQLTRA.L.ERISS.EE..K.KHLA..LE..D.V.KKQDAF.KEQLARL.ER.SEF..
RetrocopySKELD*VRATANEQLTRAFLWERISSKEEHSKTKHLAKKLEKTDGVIKKQDAFCKEQLARLQERNSEFCK
ParentalVTTEQYQKAAEEVEAKFKRY-ESHPVCADLQAKILQCYRENT-HQTLKCSALATQY
VTT....KAAEEV..KFK....SHPVC.D..A.ILQ.Y..NT...TL.CSALA.QY
RetrocopyVTTQHN*KAAEEVAGKFKCV<KSHPVCTDPYATILQYYHQNT<PKTLSCSALANQY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_168 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 23 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000013121 retrocopy
Dasypus novemcinctus ENSDNOG000000049421 retrocopy
Homo sapiens ENSG000001065543 retrocopies
Macaca mulatta ENSMMUG000000016711 retrocopy
Mus musculus ENSMUSG000000537681 retrocopy
Nomascus leucogenys ENSNLEG00000012967 3 retrocopies
retro_nleu_168 , retro_nleu_716, retro_nleu_904,
Oryctolagus cuniculus ENSOCUG000000140321 retrocopy
Pongo abelii ENSPPYG000000258275 retrocopies
Pan troglodytes ENSPTRG000000197114 retrocopies
Rattus norvegicus ENSRNOG000000132111 retrocopy
Sorex araneus ENSSARG000000121111 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000222821 retrocopy



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