Parental gene: | CHCHD3, ENSPPYG00000025827 |
| Aliases: | None |
| Description: | coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:HGNC Symbol;Acc:21906] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 7:129767522..130073746(-) |
>ENSPPYG00000025827
ATGGGTGGGACCACCAGCACCCGCCGGGTCACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCG
GCTTTCGGAAAATGTGATTGATCGAATGAAGGAATCCTCTCCATCTGGTTCGAAGTCTCAGCGGTATTCTGGTGCTTATG
GTGCCTCAGTTTCTGATGAAGAATTGAAAAGAAGAGTAGCTGAGGAGCTGGCATTGGAGCAAGCCAAGAAAGAATCTGAA
GATCAGAAACGACTAAAGCAAGCCAAAGAGCTGGACCGAGAGAGGGCTGCTGCCAATGAGCAGTTAACCAGAGCCATCCT
TCGGGAGAGGATATCTAGCGAGGAGGAACGTGCTAAGGCAAAGCACCTGGCTAGGCAGCTGGAAGAGAAAGACCGAGTGC
TAAAGAAGCAGGATGCATTCTACAAAGAACAGCTGGCTAGACTGGAGGAGAGGAGCTCAGAGTTCTACAGAGTCACCACT
GAACAATATCAGAAAGCTGCTGAAGAGGTGGAAGCAAAGTTCAAGCGGTATGAGTCTCATCCAGTCTGTGCTGATCTGCA
GGCCAGAATTCTTCAGTGTTACCGTGAGAACACCCACCAGACCCTCAAATGCTCCGCTCTGGCCACCCAGTATATGCACT
GTGTCAATCATGCCAAACAGAGCATGCTTGAGAAGGGAGGATAA
ATGGGTGGGACCACCAGCACCCGCCGGGTCACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCG
GCTTTCGGAAAATGTGATTGATCGAATGAAGGAATCCTCTCCATCTGGTTCGAAGTCTCAGCGGTATTCTGGTGCTTATG
GTGCCTCAGTTTCTGATGAAGAATTGAAAAGAAGAGTAGCTGAGGAGCTGGCATTGGAGCAAGCCAAGAAAGAATCTGAA
GATCAGAAACGACTAAAGCAAGCCAAAGAGCTGGACCGAGAGAGGGCTGCTGCCAATGAGCAGTTAACCAGAGCCATCCT
TCGGGAGAGGATATCTAGCGAGGAGGAACGTGCTAAGGCAAAGCACCTGGCTAGGCAGCTGGAAGAGAAAGACCGAGTGC
TAAAGAAGCAGGATGCATTCTACAAAGAACAGCTGGCTAGACTGGAGGAGAGGAGCTCAGAGTTCTACAGAGTCACCACT
GAACAATATCAGAAAGCTGCTGAAGAGGTGGAAGCAAAGTTCAAGCGGTATGAGTCTCATCCAGTCTGTGCTGATCTGCA
GGCCAGAATTCTTCAGTGTTACCGTGAGAACACCCACCAGACCCTCAAATGCTCCGCTCTGGCCACCCAGTATATGCACT
GTGTCAATCATGCCAAACAGAGCATGCTTGAGAAGGGAGGATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 10 .56 RPM |
| SRP007412_cerebellum | 6 .93 RPM |
| SRP007412_heart | 26 .28 RPM |
| SRP007412_kidney | 13 .13 RPM |
| SRP007412_liver | 8 .17 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000001312 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000004942 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000106554 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000001671 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000053768 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012967 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000014032 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000019711 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013211 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000012111 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000022282 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_345 | 94.65 | 81.94 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_411 | 94.71 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_501 | 78.07 | 98.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2492 | 89.91 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_3161 | 67.23 | 51.54 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000025827 retrocopies